Detail information of Os05g0121600_circ_g.7


General Information
CircRNA Name Os05g0121600_circ_g.7
ID in PlantcircBase osa_circ_026347
Alias NA
Organism Oryza sativa
Position chr5: 1157705-1157842  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os05g0121600
Parent gene annotation AP2/EREBP family transcription factor, Starch biosynthesis (Os05
t0121600-01)
Parent gene strand -
Alternative splicing Os05g0121600_circ_g.1 Os05g0121600_circ_g.2 Os05g0121600_circ_g.3 Os05g0121600_circ_g.4 Os05g0121600_circ_g.5 Os05g0121600_circ_g.6 Os05g0121600_circ_g.8 Os05g0121600_circ_g.9 Os05g0121600_circ_g.10 Os05g0121600_circ_g.11 Os05g0121600_circ_g.12 Os05g0121600_circ_g.13 Os05g0121600_circ_g.14 Os05g0121600_circ_g.15 Os05g0121600_circ_g.16 Os05g0121600_circ_g.17 Os05g0121600_circ_g.18
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-GC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACTGCAACTTGCTTGACATGCAAACAAATCATCCATCGGAAGAATTTTGACTGAATTGCAA
CTTGCacatcatactttagtcgctaccacggtgaaagcgaatcttgattatttatgcttttgtg
tttctttcgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 138
Transcript exons: 1157705-1157842
ACATCATACTTTAGTCGCTACCACGGTGAAAGCGAATCTTGATTATTTATGCTTTTGTGTTTCT
TTCGCATTACTGCAACTTGCTTGACATGCAAACAAATCATCCATCGGAAGAATTTTGACTGAAT
TGCAACTTGC

Genomic sequence ACATCATACTTTAGTCGCTACCACGGTGAAAGCGAATCTTGATTATTTATGCTTTTGTGTTTCT
TTCGCATTACTGCAACTTGCTTGACATGCAAACAAATCATCCATCGGAAGAATTTTGACTGAAT
TGCAACTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.24705314
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017