Detailed infomation of each circRNA
General Information | |
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CircRNA Name | PGSC0003DMG400026491_circ_g.2 |
ID in PlantcircBase | stu_circ_000445 |
Alias | chr03:47452471|47457459 |
Organism | Solanum tuberosum |
Position | chr3: 46376730-46381717 JBrowse» |
Reference genome | 3.0.38 |
Type | ue-circRNA |
Identification method | CIRI2 |
Parent gene | PGSC0003DMG400026491 |
Parent gene annotation |
Sigma factor |
Parent gene strand | + |
Alternative splicing | PGSC0003DMG400026491_circ_g.1 |
Support reads | NA |
Tissues | stem |
Exon boundary | Yes-No |
Splicing signals | GG-AG |
Number of exons covered | PGSC0003DMT400068109:5 PGSC0003DMT400068112:2 PGSC0003DMT400068111:1 PGSC0003DMT400068114:1 PGSC0003DMT400068113:3 PGSC0003DMT400068115:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.119661331 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zhou et al., 2018 |