Detail information of PGSC0003DMG400026491_circ_g.2


General Information
CircRNA Name PGSC0003DMG400026491_circ_g.2
ID in PlantcircBase stu_circ_000445
Alias chr03:47452471|47457459
Organism Solanum tuberosum
Position chr3: 46376730-46381717  JBrowse»
Reference genome 3.0.38
Type   ue-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG400026491
Parent gene annotation Sigma factor
Parent gene strand +
Alternative splicing PGSC0003DMG400026491_circ_g.1
Support reads NA
Tissues stem
Exon boundary   Yes-No
Splicing signals   GG-AG
Number of exons covered PGSC0003DMT400068109:5
PGSC0003DMT400068112:2
PGSC0003DMT400068111:1
PGSC0003DMT400068114:1
PGSC0003DMT400068113:3
PGSC0003DMT400068115:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTGGCAAGAGAAAGGCTTTCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCTCAAAGATA
TGATAACATGGGTGCTGAAATGGCTGATCTCGTTCAggaggccttgttggactacttcatggga
tagagaaattcgatccctctaaaggatacaaaatcccaacttatgtttattggtggattcgcca
ggtacgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGGCCTTGTTGGACTACTTCATGGGATAGAGAAATTCGATCCCTCTAAAGGATACAAAATCC
CAACTTATGTTTATTGGTGGATTCGCCAGGTACGTTCAGTTGTTTATCAAGAATCTCAACCAAC
AAAGTGAGACAAAATATCTCAACCAACAAACTATTTCTCATGCTTCCTTATTTCTAGTTTCTCT
AAAACAATTAAGTTTATCTTTCTTTTCGTTTTGGTAAGAATTATTGTACCACCTTTTATGTTTT
TGTATACATTTTTTCCTTAAGAGTCTTATTTTATGTGGCAAAACACATCTGGTCTATATCTCAT
CATGCCTTAATTTAACTTTTGTTTGTTTTCCCTAAGACGGTGGAGGCTCTGATTGTTAGGCACT
CACATCTAGTATCTATTATAGCTTAAAATAATTTTATTGATGAAATTTATGCTTCAAGATCGAC
TTCATGCTTCAAATCTTAGGAGTGTCATGGATTTTCTGCTTTCTTCCTCATCCTAAAATGTCTT
AGTTTGCGTCTGCATGGTTTTCCAGTGAAATGCTGAAAGAGTTGTTATGTTTTGTTTCCTTCTT
TTTCAAATGTAGGGTCATGTATTAAGTTATTTTACTTTAGATAGAGAAAGTTGTACTGAAAAGT
ATTAGTGGGTGCAACTTAACATTTGTAGGATATAATGTCTGGAAATTTCTTTATTAGGAAAAAT
GAGATTATTAGGATGTCCACTGCTTGAGTTGTTTAATTGTCCTCATCTTCTTTCACCCTTGTGC
TTGGGCAATTGAGCTCTTGTTTTCATTCTTTTTGTATTTCTTTCATGATTTAGATCTACTGGGC
AAACTAAAGCCTTTTTACCAGGAGAGGTAGGAAGCCCTCCTTCAGGTCATGAGCTGCATGGTGG
ATATATGCATAACATGACTTTGGACAACAGCCACCTCTTCACCGATATAACCAGGGGCGAGCAA
CAGCTGTTCAGTACAATGAAAGTCATGTCATGGCGCATTCTACCTATAACGCGGCTAATCCACT
TTCTGCTGCAAGGAATGGTGCATCATGGGGTAAAGATTCAGTACTCTCTTCTCTCTTTGGCTTT
GGTTTTTTTCTCCTTTTGTATTTAGTTGCATCCTATAGAATTGAAACGTTTTCTCTTTTGCTCA
TGATTTCATTTTTTCAAATCCAACTCTTAATTGAGTGTCACATTTACCATTGATATACACCTAA
GTACTTTATTCACAGAAATATAATTCAATCTTCAGTTCTGAAGCTAAATATGATGGTTGTAGTA
GATATATTAGTGTTTGTTATTCCTTTTCAATGATCTATTCCTTTTGATTCACATAAAATGAAAT
CAACTCTCAAGGTAGGGAAAAGGTTTACATACACATCACCCTCCCGAGGCTCCCACTTGTGATA
TTATATTAGGTGTGAGATTACACTGACTATATCATCGTTGTTGTAAAATCAAAATAAAATACTA
CTAGAAGAAGTTTCTATTTTTGTTTTCTATTTCAATAATCTATCCTGCGCATCTCAATAGATGC
TTGTTGCAGGTTTTGTTGTGAGTAATTGTGAATTATCTTGATATAAATGGAATGCATATTTCAA
CATAAAAAAGATACTATCACACCAAGGTAAACCTTAATTAAGAAAAAGGAATATATTAATTTAT
TGAAAGCATAATTAAATGGAGTATAATTAAGGATAACTGATGGTCTATTGAAAACAACCTCTAC
GGTCTTCCTACATCTCTTCTTTTCAGATTTAATATGTCCAAACACAATTTTAATTTTAATTGTT
TTTTTTTAAAAAAATTAATCTTCTAATACTATTTTTTTTTTCTTTTCAAATATTAACATTTTTA
GCCCATAATAAAAATCTTTTATAATTGGACAGGTTTGGAATATACCTCGACTTATAACTGGAAT
AAATACGAAGCTCCCATCTTGATGATAACAATAAAGAAAACGTGGCTTATGACTGATGGGACCT
CAATTTGTGAAATACTCATCCTCAATCTAGTTTTTTTGGTTGATAACTAGAAGGCCACATGACG
AACACTTATTATCATATCATGTTTAGTATGATCTAGTGATTAGTAAAATAAATTAAGAATCATG
AAAATTTTAAAAAATGTAATCTAGTATTCAATGAAATGAATTGAGAATCATGAGAATTCTGATT
TAATTTCAATATAAATATAAATATTAATAAAATTAAAAGTATTTGATACTTGTTGCTAATAGAA
GGTGCGACGGAGATAAATGGGCATGTAAGTCTAGAATTGTTGATGGGAATAAGACAAGAAAGTT
TTGAAAAAGAGAAAAGGAAGAGGTAGAGGTACACCACAAGAAGTGGGACCCGTATATCTATTCC
AACCAATGACAATTGATCTCTAATATCCAAAAACTTAATATTACATTGATCTCCTCTCGCGTTA
TTTTCATTTTCCTCCCATCAATTTAATTATCAACAACAACAACAATAAAAAAAAATCGAAAAAA
TACAAAGAAGAAATAGTAGTAAACGATATCATTTCTGTTGCAACAAACTCTTAACTTCTTTCTA
CCACCGCCATTGCAACGCCACACTGTATCACCATTTCTGTCATTTTGCTCAAATTCAGGTACGT
AAGCTGCACTCATCACTTTTAACATCTTCATCTTAATTACTCCTTTTCTTTCTATTTCGATTTA
GTTTTCATAGTCGTGTTTTTCGAATCGAACGGTAGAATCTGTTCCCCTCGTAATGTTCGCCGTG
TATACAAATCTGTTAATTCCCTCGTTATTATCGCCTCGTGAGTCGTGTGTAAACGCAAGCTGTA
TACATAATTATTACGTGCCGAAGAAAATCCAGCTGTATTTGGTTTTCTAGTTTTAAGCTGTATA
GAGATTGGAACTTAAAAGAGGTCGATCACACTTATGTGAAAATTGTATATAATAGCACCCAAGA
TGGGCCAACTGGAGTTGAAAATCACGAGGTCTAAGGTTTAAATTTCAGTGGAAGTCCTGATATG
TGTGTTGGTGGAATGTAGAAGATACTCATAAAATTAGTGTGAGGCTTGCAAAGGGTAGGATGTA
CGTAAAGCTTATCCTTACTTTCGTGGGGTGGATAGGTTGTTTCTGATAGACAGACGGCTCAAAA
GAAAGGTAACCAAAGTAGGATTGAAAAAGAATAATTATAACAAAAATAGCAAGATAACAAAATC
AAATGAAACAATGAGTAGTAGTGAAGCAAACGAAGCTGGCCCGAAAACATTGATGAGATTGCAA
CTTAGCAACTCCGGTTAATTCATTTAATTTCACACCAGTGAACTATTCGAGTTGAAATTTCTTT
TAATTCTTCTTCTTATTAAAGTATGTCACTGAAACTAACATAAATTCATTGCTTTCAAAAGAAA
ACAAGACCAAAAAACTACTACTTTTTTTAAATGTTTAGAAAAAGCGGATTTATTGTTGTCCAAA
TTTCTGATTGCTTTCCTTGTTTGTTGAGCTAACTCTATCTACTGTTACTTTTTACTGACTTTTT
CTATGTGGGACTACCTGTAGAAAGTGATTGAGGGGATTAATCAGCATAGCAACTTGGTCATAAG
CTGATATTGTTGTAATTCAATCTTCCTTGTTAGACGACGCGTGATGGTCTTGGATTTTTAGAAA
GGGATAGCCCTCATGATGGCCACAACAGCAGTTATTGGACTGAGTGCAGGAAAAAGACTCTTGA
GTTCTTCTTTCTATTATTCTGATCTTAATGAAAAGCTATCTTGTAGCAGTGATCATAGTTTTCC
CTGCCATCAGGTTCCTTCTGTTAAAAATGTGATCACCGCGAAGAAGTCATCTGAATTATAGCCC
CAGTTATGTATCCAGTCGAAAACTACAATCTGTCAAGGCTCTTAAAGAGCATATAGACATTGCA
TCCGACCCTTCTGATGTGCAGTCCTGGTTTGAAAGGTTCGAACAATTGCAAAATGAAAGTGATG
ACGAGGATGATGATTCGGTGGAGGCTTTCCTCTTGCTGCAGAAGTCCATGCTTGAAAAGCAGTG
GAATCTTTCTGCTGAAGAGACATTGACTGCTTCTCCACAACATGAAAAGAATTGTAAGAAGATG
CATATTACTTGCTCAGGGACGACTGCTAGGCGGAGGAGAACGGATTCTCGACAAAGAGTTCTTG
GTCCAAAAAGTTCAGCTACACCTATCAGTGCAACCAAGCCGCTGAGATCAATAATTGGTCCAGA
GCTACTTCAAAATCGTTTAAAAGGTTATGTTAAGGGTGTAGTAAGTGACGAGCTGCTCACACAC
ACTGAAGTGCTTCAACTATCCAAAAAGATTCAAGTTGGTCTTCATGTGGAAGAGCAAAAATCAA
GGTACTAACCTCTCCTCTTCTCTCAGTAGCTAATCATATCACCACTTCAACACTAACAGAATTT
AGTAACATATAAGAACATCAATGAACTAAAAGAAAACTGTCTGCATGCATCCACTGTATAGCTT
TTTATCCAAGCAAAACATACACATGAAACTAATCTTTATAATAACCAAGTACCCAAACAGTCAA
TTTCAGATTGTCTTGACTGTTTATGGGCTTCTATAAACTCATTTATTTTGAAAACGGGGTGATT
TTCACAAAATTTGATGTTAGATTGTTAACATCGATCAATAAAGCATGTGAGGAGGAAGGTAAGA
CATAGGAGTTGGAAGGATACCGAGATATAATTGTAAAGTTTGTTTCCTTTGTGATGTTGTTTCT
TGAAGCTGTTAAAGATGTCTCACTCTGTTTCTATCTAACCATGTAAAACTTTAGGCTGAAGGAT
AGACTGGGATGTGAGCCTTCTGATGATCAACTAGCTCTTTCCTTGAAAATGCCCCGTACTGATT
TACAATCTACATTGATCGAGTGTTCCTTGGCAAGAGAAAGGCTTTCAATGAGCAATGTTCGTCT
TGTCATGTCAATTGCTCAAAGATATGATAACATGGGTGCTGAAATGGCTGATCTCGTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.119661331
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018