Detail information of PGSC0003DMG400026491_circ_g.1


General Information
CircRNA Name PGSC0003DMG400026491_circ_g.1
ID in PlantcircBase stu_circ_000446
Alias chr03:47453107|47457781
Organism Solanum tuberosum
Position chr3: 46376408-46381081  JBrowse»
Reference genome 3.0.38
Type   e-circRNA
Identification method CIRI2
Parent gene PGSC0003DMG400026491
Parent gene annotation Sigma factor
Parent gene strand +
Alternative splicing PGSC0003DMG400026491_circ_g.2
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   GG-AG
Number of exons covered PGSC0003DMT400068109:5
PGSC0003DMT400068115:3
PGSC0003DMT400068114:1
PGSC0003DMT400068112:1
PGSC0003DMT400068113:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAAGGGTGTAGTAAGTGACGAGCTGCTCACACACACTGAAGTGCTTCAACTATCCAAAAAGA
TTCAAGTTGGTCTTCATGTGGAAGAGCAAAAATCAAgctgaaggaaagactgggatgtgaaact
tcttattatcaactttctctttccttgaaattgtcccgtactgatttacgatctacattgatcg
agtgttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGAAGGAAAGACTGGGATGTGAAACTTCTTATTATCAACTTTCTCTTTCCTTGAAATTGTCC
CGTACTGATTTACGATCTACATTGATCGAGTGTTCCTTGGCAAGAGAAAGGTTTTCAATGAGCA
GTATTCGTCTTGTCATGTCAATCGCACAAAGATATGATAACATGGGTCCTGAAATGACTGATCT
CGTTCGGGTGACTCAAATGTTGTGCATTCAAAATTTTAGATATGCAAATTTCTTGCACTTGTAC
ATTGATGAATATAGTTCAAAATAAAAATTTGCACCTCTGAAGGAAAATTCTTTCATTTTCATAC
AGGGAGGCCTTGTTGGACTACTTCATGGGATAGAGAAATTCGATCCCTCTAAAGGATACAAAAT
CCCAACTTATGTTTATTGGTGGATTCGCCAGGTACGTTCAGTTGTTTATCAAGAATCTCAACCA
ACAAAGTGAGACAAAATATCTCAACCAACAAACTATTTCTCATGCTTCCTTATTTCTAGTTTCT
CTAAAACAATTAAGTTTATCTTTCTTTTCGTTTTGGTAAGAATTATTGTACCACCTTTTATGTT
TTTGTATACATTTTTTCCTTAAGAGTCTTATTTTATGTGGCAAAACACATCTGGTCTATATCTC
ATCATGCCTTAATTTAACTTTTGTTTGTTTTCCCTAAGACGGTGGAGGCTCTGATTGTTAGGCA
CTCACATCTAGTATCTATTATAGCTTAAAATAATTTTATTGATGAAATTTATGCTTCAAGATCG
ACTTCATGCTTCAAATCTTAGGAGTGTCATGGATTTTCTGCTTTCTTCCTCATCCTAAAATGTC
TTAGTTTGCGTCTGCATGGTTTTCCAGTGAAATGCTGAAAGAGTTGTTATGTTTTGTTTCCTTC
TTTTTCAAATGTAGGGTCATGTATTAAGTTATTTTACTTTAGATAGAGAAAGTTGTACTGAAAA
GTATTAGTGGGTGCAACTTAACATTTGTAGGATATAATGTCTGGAAATTTCTTTATTAGGAAAA
ATGAGATTATTAGGATGTCCACTGCTTGAGTTGTTTAATTGTCCTCATCTTCTTTCACCCTTGT
GCTTGGGCAATTGAGCTCTTGTTTTCATTCTTTTTGTATTTCTTTCATGATTTAGATCTACTGG
GCAAACTAAAGCCTTTTTACCAGGAGAGGTAGGAAGCCCTCCTTCAGGTCATGAGCTGCATGGT
GGATATATGCATAACATGACTTTGGACAACAGCCACCTCTTCACCGATATAACCAGGGGCGAGC
AACAGCTGTTCAGTACAATGAAAGTCATGTCATGGCGCATTCTACCTATAACGCGGCTAATCCA
CTTTCTGCTGCAAGGAATGGTGCATCATGGGGTAAAGATTCAGTACTCTCTTCTCTCTTTGGCT
TTGGTTTTTTTCTCCTTTTGTATTTAGTTGCATCCTATAGAATTGAAACGTTTTCTCTTTTGCT
CATGATTTCATTTTTTCAAATCCAACTCTTAATTGAGTGTCACATTTACCATTGATATACACCT
AAGTACTTTATTCACAGAAATATAATTCAATCTTCAGTTCTGAAGCTAAATATGATGGTTGTAG
TAGATATATTAGTGTTTGTTATTCCTTTTCAATGATCTATTCCTTTTGATTCACATAAAATGAA
ATCAACTCTCAAGGTAGGGAAAAGGTTTACATACACATCACCCTCCCGAGGCTCCCACTTGTGA
TATTATATTAGGTGTGAGATTACACTGACTATATCATCGTTGTTGTAAAATCAAAATAAAATAC
TACTAGAAGAAGTTTCTATTTTTGTTTTCTATTTCAATAATCTATCCTGCGCATCTCAATAGAT
GCTTGTTGCAGGTTTTGTTGTGAGTAATTGTGAATTATCTTGATATAAATGGAATGCATATTTC
AACATAAAAAAGATACTATCACACCAAGGTAAACCTTAATTAAGAAAAAGGAATATATTAATTT
ATTGAAAGCATAATTAAATGGAGTATAATTAAGGATAACTGATGGTCTATTGAAAACAACCTCT
ACGGTCTTCCTACATCTCTTCTTTTCAGATTTAATATGTCCAAACACAATTTTAATTTTAATTG
TTTTTTTTTAAAAAAATTAATCTTCTAATACTATTTTTTTTTTCTTTTCAAATATTAACATTTT
TAGCCCATAATAAAAATCTTTTATAATTGGACAGGTTTGGAATATACCTCGACTTATAACTGGA
ATAAATACGAAGCTCCCATCTTGATGATAACAATAAAGAAAACGTGGCTTATGACTGATGGGAC
CTCAATTTGTGAAATACTCATCCTCAATCTAGTTTTTTTGGTTGATAACTAGAAGGCCACATGA
CGAACACTTATTATCATATCATGTTTAGTATGATCTAGTGATTAGTAAAATAAATTAAGAATCA
TGAAAATTTTAAAAAATGTAATCTAGTATTCAATGAAATGAATTGAGAATCATGAGAATTCTGA
TTTAATTTCAATATAAATATAAATATTAATAAAATTAAAAGTATTTGATACTTGTTGCTAATAG
AAGGTGCGACGGAGATAAATGGGCATGTAAGTCTAGAATTGTTGATGGGAATAAGACAAGAAAG
TTTTGAAAAAGAGAAAAGGAAGAGGTAGAGGTACACCACAAGAAGTGGGACCCGTATATCTATT
CCAACCAATGACAATTGATCTCTAATATCCAAAAACTTAATATTACATTGATCTCCTCTCGCGT
TATTTTCATTTTCCTCCCATCAATTTAATTATCAACAACAACAACAATAAAAAAAAATCGAAAA
AATACAAAGAAGAAATAGTAGTAAACGATATCATTTCTGTTGCAACAAACTCTTAACTTCTTTC
TACCACCGCCATTGCAACGCCACACTGTATCACCATTTCTGTCATTTTGCTCAAATTCAGGTAC
GTAAGCTGCACTCATCACTTTTAACATCTTCATCTTAATTACTCCTTTTCTTTCTATTTCGATT
TAGTTTTCATAGTCGTGTTTTTCGAATCGAACGGTAGAATCTGTTCCCCTCGTAATGTTCGCCG
TGTATACAAATCTGTTAATTCCCTCGTTATTATCGCCTCGTGAGTCGTGTGTAAACGCAAGCTG
TATACATAATTATTACGTGCCGAAGAAAATCCAGCTGTATTTGGTTTTCTAGTTTTAAGCTGTA
TAGAGATTGGAACTTAAAAGAGGTCGATCACACTTATGTGAAAATTGTATATAATAGCACCCAA
GATGGGCCAACTGGAGTTGAAAATCACGAGGTCTAAGGTTTAAATTTCAGTGGAAGTCCTGATA
TGTGTGTTGGTGGAATGTAGAAGATACTCATAAAATTAGTGTGAGGCTTGCAAAGGGTAGGATG
TACGTAAAGCTTATCCTTACTTTCGTGGGGTGGATAGGTTGTTTCTGATAGACAGACGGCTCAA
AAGAAAGGTAACCAAAGTAGGATTGAAAAAGAATAATTATAACAAAAATAGCAAGATAACAAAA
TCAAATGAAACAATGAGTAGTAGTGAAGCAAACGAAGCTGGCCCGAAAACATTGATGAGATTGC
AACTTAGCAACTCCGGTTAATTCATTTAATTTCACACCAGTGAACTATTCGAGTTGAAATTTCT
TTTAATTCTTCTTCTTATTAAAGTATGTCACTGAAACTAACATAAATTCATTGCTTTCAAAAGA
AAACAAGACCAAAAAACTACTACTTTTTTTAAATGTTTAGAAAAAGCGGATTTATTGTTGTCCA
AATTTCTGATTGCTTTCCTTGTTTGTTGAGCTAACTCTATCTACTGTTACTTTTTACTGACTTT
TTCTATGTGGGACTACCTGTAGAAAGTGATTGAGGGGATTAATCAGCATAGCAACTTGGTCATA
AGCTGATATTGTTGTAATTCAATCTTCCTTGTTAGACGACGCGTGATGGTCTTGGATTTTTAGA
AAGGGATAGCCCTCATGATGGCCACAACAGCAGTTATTGGACTGAGTGCAGGAAAAAGACTCTT
GAGTTCTTCTTTCTATTATTCTGATCTTAATGAAAAGCTATCTTGTAGCAGTGATCATAGTTTT
CCCTGCCATCAGGTTCCTTCTGTTAAAAATGTGATCACCGCGAAGAAGTCATCTGAATTATAGC
CCCAGTTATGTATCCAGTCGAAAACTACAATCTGTCAAGGCTCTTAAAGAGCATATAGACATTG
CATCCGACCCTTCTGATGTGCAGTCCTGGTTTGAAAGGTTCGAACAATTGCAAAATGAAAGTGA
TGACGAGGATGATGATTCGGTGGAGGCTTTCCTCTTGCTGCAGAAGTCCATGCTTGAAAAGCAG
TGGAATCTTTCTGCTGAAGAGACATTGACTGCTTCTCCACAACATGAAAAGAATTGTAAGAAGA
TGCATATTACTTGCTCAGGGACGACTGCTAGGCGGAGGAGAACGGATTCTCGACAAAGAGTTCT
TGGTCCAAAAAGTTCAGCTACACCTATCAGTGCAACCAAGCCGCTGAGATCAATAATTGGTCCA
GAGCTACTTCAAAATCGTTTAAAAGGTTATGTTAAGGGTGTAGTAAGTGACGAGCTGCTCACAC
ACACTGAAGTGCTTCAACTATCCAAAAAGATTCAAGTTGGTCTTCATGTGGAAGAGCAAAAATC
AA
Conservation Information
Conserved circRNAs NA
PMCS 0.109092777
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018