Detail information of AT1G02080_circ_g.17


General Information
CircRNA Name AT1G02080_circ_g.17
ID in PlantcircBase ath_circ_000188
Alias 1:380602-380998
Organism Arabidpsis thaliana
Position chr1: 380602-380998  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G02080
Parent gene annotation Transcription regulator
Parent gene strand +
Alternative splicing AT1G02080_circ_g.14 AT1G02080_circ_g.15 AT1G02080_circ_g.16
Support reads 2/3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G02080.3:2
AT1G02080.1:2
AT1G02080.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAATATTTCAAATGATGCTCTTGAACAAATTGTGCAACTTGTCACCAATGACAACCTGGATTTG
GGTTGTGCTGCTATTGAACAGGCTGCTACAGAAAAGgattacgccctggaacccgatgagtcac
gtatttataatgcagctcacttgatggttgcgagtttagctgggagtttggctcatgtgacttg
caaggttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 249
Transcript exons: 380602-380697,380846-380998
GATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTT
TAGCTGGGAGTTTGGCTCATGTGACTTGCAAGGAACCCCTGCGCACTTCAATATCCGGTCATCT
ACGGAATTCGCTTCAGGGTCTGAATATTTCAAATGATGCTCTTGAACAAATTGTGCAACTTGTC
ACCAATGACAACCTGGATTTGGGTTGTGCTGCTATTGAACAGGCTGCTACAGAAAAG

Genomic sequence GATTACGCCCTGGAACCCGATGAGTCACGTATTTATAATGCAGCTCACTTGATGGTTGCGAGTT
TAGCTGGGAGTTTGGCTCATGTGACTTGCAAGGTTTTTCCTTCTTATAAGGCCTTGGATTCTGA
AGATTCTTTAGCTTTTTGTTTACACATTTACAATAATGCTATTATATCTCGGCCCTGTTACCCT
AAACCAACAAGATCTATTTTTTCTCTGGTTTTTAATGCTCTTGTATTTTTAGGAACCCCTGCGC
ACTTCAATATCCGGTCATCTACGGAATTCGCTTCAGGGTCTGAATATTTCAAATGATGCTCTTG
AACAAATTGTGCAACTTGTCACCAATGACAACCTGGATTTGGGTTGTGCTGCTATTGAACAGGC
TGCTACAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.329056237
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020