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circRNA ID
AT1G02080_circ_g.14
Alias
ath_circ_000185
Organism
Arabidpsis thaliana
Position
chr1: 380089-380375  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
KNIFE, PcircRNA_finder
Parent gene
Parent gene annotation
Transcription regulator
Parent gene strand
+
Splice junction sequence  
ACCACTTGCCATGGACAGAGCTATCAAGGAGATTGTGTCTGGTATTGTTCAGCGAAGTGTTTGT
ATTGCATGCCAAACAACAAAGGAGCTTGTGCTAAAGctgtcagcagcacttcccaatattggaa
atcatgttgttatcaatcagaaattaagcgcatttggtatgcactttccatttcaaaggtttgt
gactaatg
Support reads
1
Tissues
leaf
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTGTCAGCAGCACTTCCCAATATTGGAAATCATGTTGTTATCAATCAGAAATTAAGCGCATTTG
GTATGCACTTTCCATTTCAAAGGTTTGTGACTAATGGTCTCCTACTGGTGAAATCATTATGATT
GTAGAGCATTGAAGCTATATTCTATTACACACTAAACTATTATCCATTGTCAGAGTGGTACCAC
TTGCCATGGACAGAGCTATCAAGGAGATTGTGTCTGGTATTGTTCAGCGAAGTGTTTGTATTGC
ATGCCAAACAACAAAGGAGCTTGTGCTAAAG
Number of exons covered
AT1G02080.3:2
AT1G02080.2:2
AT1G02080.1:2
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
380155-380372(+)
380345-380372(+)
Potential amino acid sequence
MHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKLSAALPNIGNHVVINQKLSAFG
MHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKLSAALPNIGNHVVINQKLSAFG
MHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKLSAALPNIGNHVVINQKLSAFG
MHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLK(+)
MPNNKGACAKAVSSTSQYWKSCCYQSEIKRIWYALSISKSGTTCHGQSYQGDCVWYCSAKCLYC
MPNNKGACAKAVSSTSQYWKSCCYQSEIKRIWYALSISKSGTTCHGQSYQGDCVWYCSAKCLYC
MPNNKGACAKAVSSTSQYWKSCCYQSEIKRIWYALSISKSGTTCHGQSYQGDCVWYCSAKCLYC
MPNNKGACAK(+)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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