Detail information of Os01g0100900_circ_g.3


General Information
CircRNA Name Os01g0100900_circ_g.3
ID in PlantcircBase osa_circ_000014
Alias NA
Organism Oryza sativa
Position chr1: 36818-40189  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0100900
Parent gene annotation Sphingosine-1-phosphate lyase, Disease resistance response (Os01
t0100900-01)
Parent gene strand +
Alternative splicing Os01g0100900_circ_g.2 Os01g0100900_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0100900-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGTGGAACAGTATTTCTAATGGATACTTGTGCTTGGTTTCCAGGTTATATGGAAAATACAGG
TCATATCATGGAAGTGTCGAAGAAAATACAAAGAGGttatattgctgggagtgaatccgaaggt
cattttgcattgataaacaaggcttactctatgtaagacttgggattttgaccctgtctcaatc
tctattta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTATATTGCTGGGAGTGAATCCGAAGGTCATTTTGCATTGATAAACAAGGCTTACTCTATGTAA
GACTTGGGATTTTGACCCTGTCTCAATCTCTATTTAAATAGAATATATAGACAATAATTGGTCA
CCATGTTTTCCAATAGGAGGGCGACTTAAGAAAGTATATAATAAAGTGTATTTATTGTTTTATT
TATGCTCTGTTGCGTTGGTGGAAGAAAAAAAGTAATTTGCATAATTTTATTTTTTTCCCTAGGG
AATACCGTCATAAAATTCATGTCAGCCTGTCTCAACTATCAAGATAAATAGTCCACTAGATTAC
TTCAAATGTATAGTAGGGAAACATATGTTCTTCCAGATTCAAACCAAGTGCCTCTGTTAGTATT
TTGGTGAATTGACTTATTTATAACTCATATTTCAAAGTTACCATGTAGTCCCTCCATCCCAATT
GATCATCATATATATTTATGCACCAAGACCAAAGATAATTTAAATCACATCAATCGAGACACCA
TGCACACATTCTCCCCACATACATGCATCGATTAAAACATCATGCCAATTACATCCTTAGCATG
TACACATTCTCCCTTGCTACATTAATTGTATTCTGATGAAACCCGTGTCCATGCGGTTATGTAA
TGATCAATTTGAGAAATTTTGGATTTCATTATATGATGATCAATTTGGGAAGGAGGGAGTAACT
TTTTCTAGTTTTTATAGGCCTCCATCTAATTTTAGGCTTCTAATTTACCATAAATATTCTTAAT
CCTTTCAGGTTTTCACACACCAACCCACTTCACCAGGACGTATTCAAGAGTGTGGCACAATTAG
AGGCTGAAGTAGTTGCAATGACAGCTGCTTTGCTTGGCATCAAAGAAAAATCATCCGGTGGACA
GATTTGTGGTAATATGACATCGGGCGGAACTGAAAGCATATTATTAGCAGTAAAAACATCACGC
GACTATATGCGAACAAAGAAGGGCATTACAAAGCCTGAAATGTGAGATAAATGATGGATTATGT
TATGCATTGTGATCACCTTATCTCCATGGTAATAAAGGCTTGTGATACAGGATAATTGCCGAAT
CAGCACATTCTGCATACGATAAAGCTGCTCAATATTTCAATATTAAAGTGCGGCGTGTGCCAGT
GAACAAAGAGTTTCTTGCAGATGTGAAAGGATTCAAAAGGTGTATAAACGGAAATACGATAATG
GTGAGATTTTATCCATATTCCTGTTTCTCTAGTTAGCTTAAAGCTGTTCTGATGCCTCCATTCA
CCTGAGATGAAAGATATTTGCATTTGTCTTTTCCTAAGGAAAGATTAGTATGTACCTTCTGACC
CTGTGACCTTTTATAAGGAAAGATTAGTCTTTACCTTTACCTTCTTCCTACTCTTACATTTCTT
AGTGTACATGTAAATATGTAAATGTTCCCTAACAATTTTCTGTTGCACAGATGGTGGGGTCTGC
ACCAGGATTTCCTCATGGTTTAATTGATCCTATTGAGGTATGTTAATCAATCATCGTTATGTTA
AAGAAAACCAAAAATATTTTTTCCTACTGAAATTGTGCACTGCAAGTTCAGTGATTTCTTGTAT
CCCGGATCATCTTCAGGAACTTGGGGAGTTGGCTTCACGATATGACATTTGCTTGCATGTTGAT
CTCTGCCTTGGTGGATTTGTATTGCCTTTCGCTCGTAAGCTTGGGTACCTACTTACTTCATAAC
ATGATATCTTACCATTATTATTAGCACTTGAGCAAATTTTGAATAGCTCGCCAATATACACATT
TAATCATTTTCTTACAGCAACATGATGGTTTGCCTATTAATGATTGCTTTAATTTCAATAGAGG
AGGTCTCAAACTGTCTACATAAGCAATTTGTTGATACCTGTATTATATTGCTTTTCACCTATAA
TCTTGGGTATTCCTTCATGACCATTCATTTGTTCCCTTTATCTGGATTTACTCGACTGTTCTCA
GATGATGTTCTGATTTCTTATCAGTAATTTCAGCATTTGCATGAACTTTGAAGAACTTGCCAGA
ACATTACGTAATATTCACTTTTTTAATCATGTAACATGATGGTTTGCCTGTTAATGATTGTTTT
AATTTTGTCCCGAACTGCCACCAACTGTGAACTAAAAACCCAAAGGTTATGGCCATGTATAACC
ACATATGGAACAAGTGTGTGCTTACTATCGCAATACCCAAGCTAATGTGAAGTGAACAAATATG
CAAATTTTTGCTAATCCCTAGTCATAGATCAGGTCTGATGAATCTGGACTGGTTTAAAGCAATC
TTATGATAGTTACTTATCTTAATGTTCATTTATGTCCCATTTATTGGTTTTAGATACTTGAAGT
ATATGTCTCTTTTGTTAGAAATGATGTGTTATAACTTCAATCATATATGGCATCCATTTTGTCA
AGGCCATTGTTACATCTCTGATTGAACTAATGTTATGTGTACTAATTCTATGACTTCTCTGCAA
TACAGGTACCCTATTCCTCCATTCGACTTCTGTGTCAAGGGAGTTACATCAATCTCAACTGATG
TTCATAAGTATGGATTAGCCCCAAAAGGGACAAGCATTGTCCTATATAAAAATCATGAAATTAG
AAAGGTAAAAATAGCCTTGGAGTATTTTTCTCTTTACTTTTCTCAGATATTCTAACATTATTCC
CTCCATCTATTTGGCACTGGCATCTTGGATACTACCACCAAATTCAGCATCAATTTGTTGCTGG
TAAGCTTCAATCATTTCCTATGAAACTTCTCTCTTGAGTAAACCTTTTTAAGGGGTTCTCACTT
CTCAATAAAATTTTGACCTCTATATTTATTCGACAGATATCATGGTTGTCGTTACATAACTATT
ACAGCTTAACAGATATGATCATGTTGCAAAACTGCACGAAAATGTTCAAACAGGGTAGAATATT
TCTTACATGATTATGGTAACTTTGGTTGGAAGAACGTAGATTCATGCAATGCAAATGGTAGTTT
GCGTCCTAGTAGCCCTTGGCTTACTTTCCACTATCTGACATGAGCAACGAATCTTGAACCAAAG
TTTGAATAGTGGTTTAATGTGGGGATTTTGCTTCCTTATTTTTTTTCAGTTACTGAATGGACTG
GTGGGCTCTATGTTTCACCTACTATTGCTGGAAGTAGGCCTGGTGGGTTGATAGCGGGAGCTTG
GGCTGCTATGACGTCTCTTGGACTGAACGGTAACAGGTTTATTCAGAAGTTGACCAGTCCAGTG
GTAGTTTAGTAGTGGAACAGTATTTCTAATGGATACTTGTGCTTGGTTTCCAGGTTATATGGAA
AATACAGGTCATATCATGGAAGTGTCGAAGAAAATACAAAGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.112766345
Functional Information
Coding potential Y
Potential coding position 36877-40186(+)
36857-40161(-)
36850-39970(-)
Potential amino acid sequence MFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDY
MRTKKGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSA
PGFPHGLIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVH
KYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGY
MENTGHIMEVSKKIQRGYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTA
ALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKAAQY
FNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRYDICLHVD
LCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVT
EWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGYIAGSESEGHF
ALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILL
AVKTSRDYMRTKKGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGN
TIMMVGSAPGFPHGLIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGV
TSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAM
TSLGLNGYMENTGHIMEVSKKIQRGYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLE
AEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHS
AYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR
YDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIR
KHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQR(+)
MQNDLRIHSQQYNLFVFSSTLP*(-)
MTFGFTPSNITSLYFLRHFHDMTCIFHITVQSKRRHSSPSSRYQPTRPTSSNSR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017