Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0100900_circ_g.3 |
| ID in PlantcircBase | osa_circ_000014 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 36818-40189 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0100900 |
| Parent gene annotation |
Sphingosine-1-phosphate lyase, Disease resistance response (Os01 t0100900-01) |
| Parent gene strand | + |
| Alternative splicing | Os01g0100900_circ_g.2 Os01g0100900_circ_g.4 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os01t0100900-01:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.112766345 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
36877-40186(+) 36857-40161(-) 36850-39970(-) |
| Potential amino acid sequence |
MFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDY MRTKKGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSA PGFPHGLIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVH KYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGY MENTGHIMEVSKKIQRGYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTA ALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKAAQY FNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRYDICLHVD LCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVT EWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQRGYIAGSESEGHF ALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILL AVKTSRDYMRTKKGITKPEMIIAESAHSAYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGN TIMMVGSAPGFPHGLIDPIEELGELASRYDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGV TSISTDVHKYGLAPKGTSIVLYKNHEIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAM TSLGLNGYMENTGHIMEVSKKIQRGYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLE AEVVAMTAALLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHS AYDKAAQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASR YDICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNHEIR KHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKKIQR(+) MQNDLRIHSQQYNLFVFSSTLP*(-) MTFGFTPSNITSLYFLRHFHDMTCIFHITVQSKRRHSSPSSRYQPTRPTSSNSR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |