Detail information of BGIOSGA016280_circ_g.3


General Information
CircRNA Name BGIOSGA016280_circ_g.3
ID in PlantcircBase osi_circ_014298
Alias Chr04:19647229_19647691(MH63RS2), Chr04:19620220_19620682(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16776809-16777271  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2
Parent gene BGIOSGA016280
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016280_circ_g.1 BGIOSGA016280_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016280-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGATTTTGAAGCCGCCGGTGATCGCGGTTGTGCTGAAGGTGCACATGCATTGTGAGGCCTGTG
CTCAGGGGATCAGGAAGAGGATCCTCAAGATGAAAGggagtggaggatgtgatcgccgactcga
aggcgcacaaggtgttggtgaaagggaagaaggcggctgcagacccgatgaaggtggtggagcg
agttcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGTGGAGGATGTGATCGCCGACTCGAAGGCGCACAAGGTGTTGGTGAAAGGGAAGAAGGCGG
CTGCAGACCCGATGAAGGTGGTGGAGCGAGTTCAGAAGAAGACCGGCCGGAAGGTGGAGCTCCT
GTCGCCGATGCCTCCTCCACCGGAGGAGAAGAAGGAAGAGGAGAAGAAAGAGGAACCTGAGCCT
CCAAAGCCTGAGGAGAAGAAGGAGGTGAATGATCCTAGCAAGTGCTCATAGAGACATAATTACC
CTTCATGCATTTTCCTGCACTTTCCATCACCAAATCGGCGGTAATTGCGCCAATTTTGCTTGAA
CTGTGTAGTTCAAATACTGACATAAGGATATCTCTGTCTCTGTTTGATTTTGAAGCCGCCGGTG
ATCGCGGTTGTGCTGAAGGTGCACATGCATTGTGAGGCCTGTGCTCAGGGGATCAGGAAGAGGA
TCCTCAAGATGAAAG
Conservation Information
Conserved circRNAs osa_circ_023622 zma_circ_001066
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021