Detail information of BGIOSGA016280_circ_g.1


General Information
CircRNA Name BGIOSGA016280_circ_g.1
ID in PlantcircBase osi_circ_014296
Alias Chr04:19646091_19647345(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16775669-16776925  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016280
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016280_circ_g.2 BGIOSGA016280_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA016280-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCGACTCGAAGGCGCACAAGGTGTTGGTGAAAGGGAAGAAGGCGGCTGCAGACCCGATGAAG
GTGGTGGAGCGAGTTCAGAAGAAGACCGGCCGGAAGggagaagcccaagcaggaggagaagccc
aaggagcaggaggaaggcaagaaggaggagaagcccaaggaggaaggggagaaggggaaggacg
gcggcggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGAAGCCCAAGCAGGAGGAGAAGCCCAAGGAGCAGGAGGAAGGCAAGAAGGAGGAGAAGCCC
AAGGAGGAAGGGGAGAAGGGGAAGGACGGCGGCGGCGGCGAGGAGAAGAAGGACGGCGAGGCGC
TTGCGGGGGGCGGACGCTCCAACCGCCGACGCCGCCGAACGCACGACGTGGTGATGCGCGTCTA
CATGCACTGCGAGGGCTGCGCCAGGAAGGTCCGGAAGATCCTCAAGGGATTCGATGGTAATGCT
CCTTTTCTAACCTCGCCTGATTATGTTCTACATTGATGATTGATGCTGTGTTCTTTGCTCCCCT
TTTTTTTTTGTTGGGTCGGATTAATCTTTCATGTTCAGTGTCATGTGTGTGTGTGTTCTTGTCT
GTGATGTGTGAAATTCTAGTGTTTAATCTGGGCATATGATGTCTGAACATTTTAGGTGGAAATT
TTCTTTCAGGGAATGAGAACTCCTTTTTTTTTCTTTTTCTGTTTGTTGGAACTTGTGTTTTCGT
TTGGGAATGGAAGCTGGGAAAAAAAAAGAAAGTCTGTTCGTTCATCAGGTCCGAGAGGCATGAT
GTGCTTAGCAAATTGGTTATAAAAAAAAATTAACTGAAGACTGTGGGTTTTCTCTGTGTGCTGA
TCTGTGTGGTTCAAGATATATTCTAAGGTTGTTTTCAGAAGAATTCATGTGGTTTCATGGTGGG
ATTTGGAGGGGAGGTTAGGTGGGGGTAAGCTTTTAAATAATCAGATTCACCTAGTCAATCAACT
TCAGATCTTTCTTTTTCAAGAGCCGCACATGAATCCACCCAGTTGATTAATGGTTTAAGAGAAT
GACTAGAGATCCGAATAACTTTTAACTCGGGAAAGTTGGAGTAGATTCCAAGAGAATGACAGCC
TTGAGTATCATGTCCTTCAGTGTTTTGTTCTAAAAAAGCCCAAAAGTGAACCTGATTCCCCAAT
CATCTTCAGATGCTCAAGATGTTGCAAGTATATCTCTGCATATTCTCCATGTCTTACTACTAGT
AGTTGCTATCAAGGGAAATTCAGGATTCTTTTAGCTCAAAAGACTCAGTTTTCATGGGTGTAGC
GGTATCGATTCCGCATCCAAAAACTAAAATATATGTTCTTGTGTGTAATGTAGGAGTGGAGGAT
GTGATCGCCGACTCGAAGGCGCACAAGGTGTTGGTGAAAGGGAAGAAGGCGGCTGCAGACCCGA
TGAAGGTGGTGGAGCGAGTTCAGAAGAAGACCGGCCGGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021