Detail information of Os03g0788300_circ_g.3


General Information
CircRNA Name Os03g0788300_circ_g.3
ID in PlantcircBase osa_circ_022197
Alias Os_ciR1707
Organism Oryza sativa
Position chr3: 32746299-32746402  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0788300
Parent gene annotation Conserved hypothetical protein. (Os03t0788300-01);Hypothetical c
onserved gene. (Os03t0788300-02)
Parent gene strand +
Alternative splicing Os03g0788300_circ_g.1 Os03g0788300_circ_g.2 Os03g0788300_circ_g.4 Os03g0788300_circ_g.5 Os03g0788300_circ_g.6
Support reads 13/1
Tissues root/root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTCTCAACATGCCATACTGATTACTGGCGCTCGAATTTTTTTCTTGTTCAgtattgtgttta
ctgcacataatgtcaaatcattctcagccatgttttcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 104
Transcript exons: 32746299-32746402
GTATTGTGTTTACTGCACATAATGTCAAATCATTCTCAGCCATGTTTTCATGTGTTCTCAACAT
GCCATACTGATTACTGGCGCTCGAATTTTTTTCTTGTTCA

Genomic sequence GTATTGTGTTTACTGCACATAATGTCAAATCATTCTCAGCCATGTTTTCATGTGTTCTCAACAT
GCCATACTGATTACTGGCGCTCGAATTTTTTTCTTGTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.226057131
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017