Detail information of Os07g0211800_circ_g.2


General Information
CircRNA Name Os07g0211800_circ_g.2
ID in PlantcircBase osa_circ_033221
Alias NA
Organism Oryza sativa
Position chr7: 6109539-6113456  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0211800
Parent gene annotation Protein of unknown function DUF1749 family protein. (Os07t021180
0-01);Similar to predicted protein. (Os07t0211800-02)
Parent gene strand -
Alternative splicing Os07g0211800_circ_g.1 Os07g0211800_circ_g.3
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0211800-02:6
Os07t0211800-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAACTGCATATTGCCAACTTACTCGGTTGCTAAAAACCCATCCGTCAAACCACCGATGAAGAT
CACCTGGTGGTTAAAATCACCAGTTTTAAATGCGACctggcactgtgttgttgacatatgacca
agtctctgcctcaactgatcttcactaagatctgagctgaacatgtcatcatcacccatatatg
cacaaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGCACTGTGTTGTTGACATATGACCAAGTCTCTGCCTCAACTGATCTTCACTAAGATCTGAG
CTGAACATGTCATCATCACCCATATATGCACAAAGGGAGTGATACCTACACATTATTTCTATGG
CATTAGAGTACAACTGAAGAAAAAATGATGTTTGATTCGTTGCAGATAATTTTTTAAGATCACA
CTGACTAACAAAGGATACTAGGAGATATGCTGGTAAATAGATCTAATAAAATAAAAGATATGGA
ACAAAAAGAAGTAATAGGATATTGGATCATTTGAAACAATACAGAAAGGTTAACTTTGCATCAT
TTGAAAAGAAAAAAGGACTAAGACCCCACTAAGAGTTGGTCATGAGAAACATAAGTGGGAGACA
AAAACATCAGGTTTGTTACATAGTGTTTCATTCTTATCATGTTTGTTCTATTCATGTGGTTCAA
TTTTCATCATCCATGATTTTAACTTGTATTTGCGAGTTTCTTTGCTCAACATAACATAGATAAC
TCTCCCATGCTACATGGTCCACAGAGTCTACGAGCAAGAAATTTTGTATCATTGGTCATCATAG
CCGAAGGAGGCGCAACAAGTTGTGTCTTAGGTCATCATCATCACAATCTAGAGAACTATAAGGG
ATTCTACAAAATTCTCAAGTCCCAACTAAAGTTTTTCAGAACATAGGTTAAACATCCAATAGCA
ATAACAGCTTGTGACTCCTCATCTAACTCTTTACGTAGTGGTTGAAGAATACATGATCATAAAT
CAAAATACTGAATCCCATTAACTATCATTTTTCAGTAATCATAGTATGAGCGGTTATTGAAATT
TTTGTTGCTAACAGAGGTGTAGATCTTGCGACATCTTTATTAATCCCAGAGGAAGACATCACTG
ACACAAAAGTATATCTGAGCATCTCAGGCATGGAAATTGATACCTGTAGGCAGTAATCGGAGCA
TCTGGATTTGCTTCCCTGGGCATCAAATCCATTCCACGGCCCTCACTTAACATTTTTGCTGCCA
AATCTATCATTTCTGCAGTTTCTGGAAGTGTTGCTCTATACTCCCTGTCACTTACTGGGGCCTG
AATATCATAGAAGTTGAATCAAGATACCGTTTACATGGATTTACACATAAAAAAGCAATTATTC
TCAACAGGTTACAAATTCATCAGTTTGGTCTGTTATTTAGGGAGGAAGTCCCTAACTTCCTATC
ATAGTTCACATTCAAATATTTTCACTTCACCCCTTCGCATCCAAACAAGAAGATAGGGACAGGG
AGAATACCTGCAAAATGACCCCAGAAACTGCCTTGGAACATGCAAAATTTGTCCGCATGTAATG
CACAATATCCTGGCATTGACGGAAAAAATTGTGTTATCTTTTTCTATGATAAAAATACAATGCT
GACCATAAACTTGTCTCAAGTGGTCAAGATGTCTAAACTTTAGAAATGCATATAAGAGCCTCTG
AATTTGTTTAAAATGGACCACTCAAGGTCCCAAACATGCCAAAAGGAGCACAGTACCTGACCTG
ACAAACCGGACTAAGTTCAATGTGGATGTTTTGCCCACATGAGTCTTCCATGAAAAGTGAATTT
GAGATGAAAATGTACACATAAACCCCTAATATGGAATCCATGGGCATTATGTGTGCCCCACTGA
AAATAATGAAAGTGCTCTTGGCTAATGAGAATATGAGACCCAGACTTCTAGGATTCTCGAGCAA
AGTTCACAAATTGTGTGTTTTCTGAATTTCAGAATGCATTGGAAATTGGATAGCTAAACAGCAA
AAAGGCTGGTTGTTTAGAGCGGGAAGACAGACAGAGATAGTTGAGTAAATCAAAATGGGAGCTG
GTCAACCAAAAGTGAGATAAGGGGAGGATAGAAAGAGGGCTTATGATAAGTGATTCATTCCCTT
CTTCACATGCTTTAATTTCTACTATGAATTAATACTAAACTCCCTTTGTCCAATCTGAACATGA
TAAGCTTGAAACTCAGCTACAATTCAGCGCACGGAGAAGGAAATTATGATAGGCAAGTGAAAAG
GGGAAGCAGAATGGACTAGGACAGGTTTGGGGCAAGGTGGAATTGGAAGGGATTTGCATGCAAT
TGGACTAGTATGGGGATTAATATCAATACAAGTGCTTATGTACCTACAGTTTTAACAATACTGG
ATGAATTTGCTTTCGTATATGTCCATGGCATGGCTGGTAAGTTCCTACAGTAGTCAGTAACACT
AGACATGGTCACCACTCAGCACATCAAATCAGAAATTATATTAAGTGTGGCACATCTGTAATCT
AAAGTGAAACACAGGTGCCAAGTCCAGTATGCAATTCTCAAGTTTAGGGATCCACTTGACCACT
GGGGTAAGTTTATAAACCTATGAAGCATTACTATTTAGACTATAAATAGTACCAACATATCAGT
GAGCATACCTGGCAACCAGTACTGTGACCAAGCAATATTACTCCATCAGAATTTTCTTTGTTTA
TCAAGTAACTGATGAGTTGATCTAGTTCCAATGCATCCTTTGACAAGAAAACATATAATCAATA
CTTGATTCCAAAAAAGTAGGGTTAAAATGTAAAGCACCCAAAAAAACGAATAAAATGGACAATC
CAATCAAACGTCCTGCAGTAGAATAAGAAAAACACAGAAGGGAAAAAAGAAGTTTACCACCAAA
CTAGCAGATAGCTCAAGCAACCACATTCTGCATACAGTACTTTCGGATGGCAAGTATAAATTAA
GATCTCATGACTACTTTGGTGGTCATTGGAAAATACAAATGAGATTCTAGAACTAGCTTCCTGG
GTATGAGTGAATGTGTAGTCAAATCATGTAAGTAAGTCGATCAAAGTGCGGAATGACAAGATTG
AAAAACTGAACATATTATGTAAAAAAGAATATGAAAATTAACTTGAGAACATTAAAATCATTCT
TAAGTACCTCAATTCTTCTTTCAGCATGCCACTAAGACCATGAACACCTCAATGTATGCAAATG
CGGTTCTTAAACTCTAAGGATGAAAAGGTCCATGTTACAGATCATACCTGCTCTAAGCTGGAAA
TTCCATACCCAGTGTATGATGAAGAAAGTAACGGCTGTACCAGTGACCATTTCTCGACCTCTAG
TGCAAGTGACAAAGGCTCCAAGTAGCTGTAATGTTCCAACATGGATTAGAATAATAAAATTAGT
TCCAGTCTTAACCAAGAGAAAAAAAAATGATAACATATGTATTATGATTATATACTTACAGAAC
TTATTGTGTTATTTTTCCTATCCTTCTCCAATTCATCATTTTTCAGATTTTTCTCATGTTTGTT
ACTCTCAACATATAATGAATTATAACTTGAAATTTTATACATATGCCGAGTAAATAATAACAAC
AACTAGATTATCTCATACTGATTTGGTGAGAGGGAAGTGATTGCATGAATGCATCATGAAGTAC
TAAATGGTGATTATATAGTATATATTTCCATGTTTCCATGTATGCATCATGCTATGCAACTCAG
TACATCAGGGCAGCTTCCATACTGAGGAGTGACATGGCTGAAGGGAAGGCACTTTAGGATAGGG
AGGAGACCACAGACTAGGATGAAAGAACTTTCAGGGAGAAAGGCATTTCACTCCATGCTTCAGA
ACAACTATTTTATAGACTAATCAAAACAATAACTTGACTAACTAACAGTAAAGATACCAAATAA
CGTTGTTACTGAAGCGCTTGGACAGTACCCTAATTGGAAACTCATGAGAACTTTCACTATCAAT
AGTGTCTTCTAATTCAACAAATGATATGGAAAAATATTTAATGGAACTGCATATTGCCAACTTA
CTCGGTTGCTAAAAACCCATCCGTCAAACCACCGATGAAGATCACCTGGTGGTTAAAATCACCA
GTTTTAAATGCGAC
Conservation Information
Conserved circRNAs osi_circ_017652
PMCS 0.098392513
Functional Information
Coding potential Y
Potential coding position 6113414-6109560(+)
6113451-6109591(+)
6110878-6109541(-)
Potential amino acid sequence MKITWWLKSPVLNATWHCVVDI*(+)
MRPGTVLLTYDQVSASTDLH*(+)
MRTNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSEGRGMDLMPREANPDAPITA
YRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVAFKTGDFNHQVIFIGGLTDGFLATD
YLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSDGVILLGHSTG
CQDIVHYMRTNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSEGRGMDLMPREAN
PDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVAFKTGDFNHQVIFIGGLT
DGFLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINKENSDGVI
LLGHSTGCQDIVHYMRTNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKMLSEGRGMD
LMPREANPDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQVAFKTGDFNHQV
IFIGGLTDGFLATDYLEPLSLALEVEKWSLVQPLLSSSYTGYGISSLEQDALELDQLISYLINK
ENSDGVILLGHSTGCQDIVHYMRTNFACSKAVSGVILQAPVSDREYRATLPETAEMIDLAAKML
SEGRGMDLMPREANPDAPITAYRYHSLCAYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017