Plant Circular RNA Database

Detail information of Os09g0362800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os09g0362800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_038978
					
						Alias
						Os_ciR4143
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 11862947-11865951  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os09g0362800						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os09t0362800-01);Peptidase M1, ala
nine aminopeptidase/leukotriene A4 hydrolase domain containing p
rotein. (Os09t0362800-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os09g0362500_circ_igg.1 Os09g0362500_circ_igg.2 Os09g0362500_circ_igg.3 Os09g0362500_circ_g.1 Os09g0362500_circ_igg.2 Os09g0362500_circ_igg.3 Os09g0362500_circ_igg.4 Os09g0362500_circ_igg.5 Os09g0362500_circ_ag.1 Os09g0362500_circ_ag.2 Os09g0362500_circ_ag.3 Os09g0362500_circ_ag.4 Os09g0362500_circ_ag.5 EPlOSAG00000024676_circ_ig.1 EPlOSAG00000024676_circ_ig.2 EPlOSAG00000024676_circ_ig.3 Os09g0362800_circ_g.2 Os09g0362800_circ_g.3 Os09g0362800_circ_g.4 Os09g0362800_circ_g.5 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0362800-02:9
Os09t0362800-01:8

General Information
CircRNA Name	Os09g0362800_circ_g.1
ID in PlantcircBase	osa_circ_038978
Alias	Os_ciR4143
Organism	Oryza sativa
Position	chr9: 11862947-11865951 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Os09g0362800
Parent gene annotation	Hypothetical conserved gene. (Os09t0362800-01);Peptidase M1, ala nine aminopeptidase/leukotriene A4 hydrolase domain containing p rotein. (Os09t0362800-02)
Parent gene strand	+
Alternative splicing	Os09g0362500_circ_igg.1 Os09g0362500_circ_igg.2 Os09g0362500_circ_igg.3 Os09g0362500_circ_g.1 Os09g0362500_circ_igg.2 Os09g0362500_circ_igg.3 Os09g0362500_circ_igg.4 Os09g0362500_circ_igg.5 Os09g0362500_circ_ag.1 Os09g0362500_circ_ag.2 Os09g0362500_circ_ag.3 Os09g0362500_circ_ag.4 Os09g0362500_circ_ag.5 EPlOSAG00000024676_circ_ig.1 EPlOSAG00000024676_circ_ig.2 EPlOSAG00000024676_circ_ig.3 Os09g0362800_circ_g.2 Os09g0362800_circ_g.3 Os09g0362800_circ_g.4 Os09g0362800_circ_g.5
Support reads	2
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0362800-02:9 Os09t0362800-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAAGGAAGCAGAGATCTCCCAGTTCTTCGCAACCCGCACTAAGCCCGGGTTTAAGAGGGCACT
AAAGCAGAGCCTGGAGAATGTGCGGATCAGCGCAAGgaccagtttttattagatggatcctctg
attctggcatgtggattgtccctattactttaggatgcaattcacatgatatgcagaaaagatt
cttactga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 736
Transcript exons: 11862947-11863106,11863323-11863449,11863736-11863920,11
864000-11864070,11865676-11865754,11865838-11865951
GACCAGTTTTTATTAGATGGATCCTCTGATTCTGGCATGTGGATTGTCCCTATTACTTTAGGAT
GCAATTCACATGATATGCAGAAAAGATTCTTACTGAAACATAAATTCAGCGACATAAAGGGCAT
CAATTCACAGTACGATGACCAAGACCGACAGAAGGCATCGTGGAAGATGCACATGCTCTTTCTA
TTGCTGGCAAGCAAACATTGTCGTCGTTACTACATTTACTGTATGCTTGCCGTGACGAGGATGA
TTTCAGTGTTCTTTCACACATAAATTCTGTAATTTGCAGAAAATTAGGGTGGGACCCTAAGAAC
AGTGAAAGCCACCTGGATGCAATGCTTAGACCAGTGCTCTTGGTTGGCCTAGTTCAGCTTGGGC
ATGATAAGACTATAAGTGAGGGAGTTAGGCGTTTCCAAATCTTCTTTGATGATCGCAATACTTC
CCTTCCTCCAGATACTAGAAAGGTAGGCTGCATACCTCTCTGTGATGCATAATGTTAGTAGCAC
AAACAGATCTGGCTATGATGCTCTTCTAAAGGGAAAACTGGGATCGTATCACGAAGACATTTGC
AGCAAGCGCAATCTTATCGGATTATGTCAAATCTATTGTCACATTGGTTCACCTCTAAAGAGAA
GGAAGCAGAGATCTCCCAGTTCTTCGCAACCCGCACTAAGCCCGGGTTTAAGAGGGCACTAAAG
CAGAGCCTGGAGAATGTGCGGATCAGCGCAAG
						
					

						Genomic sequence
						
							GACCAGTTTTTATTAGATGGATCCTCTGATTCTGGCATGTGGATTGTCCCTATTACTTTAGGAT
GCAATTCACATGATATGCAGAAAAGATTCTTACTGAAACATAAATTCAGCGACATAAAGGGCAT
CAATTCACAGTACGATGACCAAGACCGACAGAATAGTGGAAACTTCTGGATTAAGCTGAATATT
GATGAAACAGGATTTTATAGAGTCAAATATGATGATGAACTTACAACTGCACTTCGAAATGCAT
TGCAGATGAAGAAGCTCTCCCTAATGGACAAAATCGGTAGACACAAACACAACATGGCACAATT
AGTCTCGATTACAATTTACAGTGATTTGGTAACTGGTATTATAACACTATTATTACAGGCATCG
TGGAAGATGCACATGCTCTTTCTATTGCTGGCAAGCAAACATTGTCGTCGTTACTACATTTACT
GTATGCTTGCCGTGACGAGGATGATTTCAGTGTTCTTTCACACATAAATTCTGTATGTGTATTT
CATGACCAATTGATTATTCCACGATGTCCGGTTATTCTTTGGCGCTTATTTGTCTACATATTTT
ATTTTGGCTTGTCAGGTAACTTCTAGTGTAGCTAAAATATCAATTGATGCTACTCCTGAATTGG
CTGGTGAAATCAAACAACTTTTTATCAAGCTTCTTCTCCCTACTGCTGAGTATTTTCCTGCCCT
TTAACTCTCAATATATTATTTCCCAAGATACATTCCTTTTGTATGGGTATGTTTGTTTAGATAT
GCTTCTTGTATGGCCATGTTTATTTGCAGAAAATTAGGGTGGGACCCTAAGAACAGTGAAAGCC
ACCTGGATGCAATGCTTAGACCAGTGCTCTTGGTTGGCCTAGTTCAGCTTGGGCATGATAAGAC
TATAAGTGAGGGAGTTAGGCGTTTCCAAATCTTCTTTGATGATCGCAATACTTCCCTTCCTCCA
GATACTAGAAAGGTACTACCTTTTAGCCATATTATTTTACCTGGTCTTCTGCCCTTTTAATAGA
CTCATCTATCTGTAGTTTTTGCATTGATCAGGCTGCATACCTCTCTGTGATGCATAATGTTAGT
AGCACAAACAGATCTGGCTATGATGCTCTTCTAAAGATATATAGGGAATCAACTGAAGTGGAGG
AAAGGTTAAATGTATTAGGTTCGTACTTTTCAATCTTCTTAGGTTAACAAAGAATGATATTTTG
GGTTTCTTCCCTGAAGGTTTTGTGTCCCTTTTTATAGGCATACTATCTTCTTGCCAGGATAAGG
ATATTGTTCTTGAATCGTTGAATTTTATTTTCACAGATGAGGTATAAGCTATTGATTGTTTCTT
CTTTCATGATTCCATTGGAAGGTCATGGACGAATTTGTAGTTCTATGCTAACTACCTGTAAGTT
ATATACATATCTCATTTGCTTATCTTGCTTGTCAGGTGCGCAATCAAGATGCATATCTTGTCCT
TCGAAGTGTTATTATTGACGCACGTGAAACTGCATGGTCCTGGTTGAAGGTATCAGTGTGTTGC
ATTATATATTATTGTTGATATTATAAATATTAAAGTTTTAACTATATATATTAAAATCAGATAA
AAATAAAAGTCCATGTTAGAAACAACTTTCTAACTATTAATTTCGAATTTCAGAAATAAATAAA
AATCGAGAGTCCAAGATAAGTACAGCTTCGTATTTATTAATTCTAAATTCTGGAAAAACTAGAG
AGTCCACAATTTTATAAGTGTTCTTATCTAACATGAACTCTCCTATAATCTAGGGTTATGATAA
TAGGATCCACCTAATCAATGACCGTCTTTTTGGTTAACATAGAAGCTCCCTTGGAGGCTCAGTG
CCCAATTTAGTATAGGGGTAGGGATAGATGTGTTATCGCCACATAAAAATTGTGACGTGATTCA
CTTAAGAATTTTGCATGTTTATTCTTCTATAAATCATCAAATATTATGCATGCTTCTACATTCC
AAATTATAGTAAATAGCTAAATTCATTGCGCACTTCAATGCTGAAATAATACTCCATAGATACG
TACGCTAAGGTGGTGATTATATTTGTAAAGGAAAAAAAAATACTTCCCTACTATCCGCTGAAGC
ACTTAATTTTTGTTCTCATCAATTTACCCCCCAACCACACTAGTAGGGAATATCTACTATCTGC
TGAAGTGCTTCATTATATTGAATCTCTGTTTGCTCTCTTGTTATACAAGCTAAGTGAAATTGTG
TGTGCCCTCCTCTGATCATAATTACTTGATATTTTGGACAAGATCTGGTTAATATTTATGTCAA
AATATCGATGTCTTCAGAAGTATTTCATAATCTCGTAAACCTATTGGATTTTAAGAACTTGTTC
TGTTACAGAAAATTGTGGCCAAAGTCGTAACTCAAATACCGTGAAAAACTCAAACTTCAAGTAC
TTTGACCAGAGGGAATATGATAATAGATGATCGCTTACCGTATGTATGAAATACTTTTGAAAAA
TAAATCATGACTTTTTAAAAGTCAGTCTTAGTTACTATGAAACTATACGCAAGTTGCCTCTTAA
AGAAAAACCTTTGAATGAAAAATCGAGTGGGATGCCCTTGTTCAGGAATTAAATTTCACGTTTT
GTTAACCTCGTGTTCTTTCTATTTCCTTACAAAGAGCTATTATACTATAAGCCAACAGTGGGAT
ATTCAAAACATTTTGCTTACATGCCCTATTATGTGAATGCAGGAAAACTGGGATCGTATCACGA
AGACATTTGCAGCAAGCGCAATCTTATCGGATTATGTCAAATCTATTGTCACATTGGTATCATA
CATCTGCACTTTTCTATTCCCCAATTCCGTATATGTTATTCTGATCGGGCCATTGCTGATCCTT
GTTTCTTGGCAGTTCACCTCTAAAGAGAAGGAAGCAGAGATCTCCCAGTTCTTCGCAACCCGCA
CTAAGCCCGGGTTTAAGAGGGCACTAAAGCAGAGCCTGGAGAATGTGCGGATCAGCGCAAG
						
					

			
		

Sequences
Splice junction sequence	AGAAGGAAGCAGAGATCTCCCAGTTCTTCGCAACCCGCACTAAGCCCGGGTTTAAGAGGGCACT AAAGCAGAGCCTGGAGAATGTGCGGATCAGCGCAAGgaccagtttttattagatggatcctctg attctggcatgtggattgtccctattactttaggatgcaattcacatgatatgcagaaaagatt cttactga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 736 Transcript exons: 11862947-11863106,11863323-11863449,11863736-11863920,11 864000-11864070,11865676-11865754,11865838-11865951 GACCAGTTTTTATTAGATGGATCCTCTGATTCTGGCATGTGGATTGTCCCTATTACTTTAGGAT GCAATTCACATGATATGCAGAAAAGATTCTTACTGAAACATAAATTCAGCGACATAAAGGGCAT CAATTCACAGTACGATGACCAAGACCGACAGAAGGCATCGTGGAAGATGCACATGCTCTTTCTA TTGCTGGCAAGCAAACATTGTCGTCGTTACTACATTTACTGTATGCTTGCCGTGACGAGGATGA TTTCAGTGTTCTTTCACACATAAATTCTGTAATTTGCAGAAAATTAGGGTGGGACCCTAAGAAC AGTGAAAGCCACCTGGATGCAATGCTTAGACCAGTGCTCTTGGTTGGCCTAGTTCAGCTTGGGC ATGATAAGACTATAAGTGAGGGAGTTAGGCGTTTCCAAATCTTCTTTGATGATCGCAATACTTC CCTTCCTCCAGATACTAGAAAGGTAGGCTGCATACCTCTCTGTGATGCATAATGTTAGTAGCAC AAACAGATCTGGCTATGATGCTCTTCTAAAGGGAAAACTGGGATCGTATCACGAAGACATTTGC AGCAAGCGCAATCTTATCGGATTATGTCAAATCTATTGTCACATTGGTTCACCTCTAAAGAGAA GGAAGCAGAGATCTCCCAGTTCTTCGCAACCCGCACTAAGCCCGGGTTTAAGAGGGCACTAAAG CAGAGCCTGGAGAATGTGCGGATCAGCGCAAG
Genomic sequence	GACCAGTTTTTATTAGATGGATCCTCTGATTCTGGCATGTGGATTGTCCCTATTACTTTAGGAT GCAATTCACATGATATGCAGAAAAGATTCTTACTGAAACATAAATTCAGCGACATAAAGGGCAT CAATTCACAGTACGATGACCAAGACCGACAGAATAGTGGAAACTTCTGGATTAAGCTGAATATT GATGAAACAGGATTTTATAGAGTCAAATATGATGATGAACTTACAACTGCACTTCGAAATGCAT TGCAGATGAAGAAGCTCTCCCTAATGGACAAAATCGGTAGACACAAACACAACATGGCACAATT AGTCTCGATTACAATTTACAGTGATTTGGTAACTGGTATTATAACACTATTATTACAGGCATCG TGGAAGATGCACATGCTCTTTCTATTGCTGGCAAGCAAACATTGTCGTCGTTACTACATTTACT GTATGCTTGCCGTGACGAGGATGATTTCAGTGTTCTTTCACACATAAATTCTGTATGTGTATTT CATGACCAATTGATTATTCCACGATGTCCGGTTATTCTTTGGCGCTTATTTGTCTACATATTTT ATTTTGGCTTGTCAGGTAACTTCTAGTGTAGCTAAAATATCAATTGATGCTACTCCTGAATTGG CTGGTGAAATCAAACAACTTTTTATCAAGCTTCTTCTCCCTACTGCTGAGTATTTTCCTGCCCT TTAACTCTCAATATATTATTTCCCAAGATACATTCCTTTTGTATGGGTATGTTTGTTTAGATAT GCTTCTTGTATGGCCATGTTTATTTGCAGAAAATTAGGGTGGGACCCTAAGAACAGTGAAAGCC ACCTGGATGCAATGCTTAGACCAGTGCTCTTGGTTGGCCTAGTTCAGCTTGGGCATGATAAGAC TATAAGTGAGGGAGTTAGGCGTTTCCAAATCTTCTTTGATGATCGCAATACTTCCCTTCCTCCA GATACTAGAAAGGTACTACCTTTTAGCCATATTATTTTACCTGGTCTTCTGCCCTTTTAATAGA CTCATCTATCTGTAGTTTTTGCATTGATCAGGCTGCATACCTCTCTGTGATGCATAATGTTAGT AGCACAAACAGATCTGGCTATGATGCTCTTCTAAAGATATATAGGGAATCAACTGAAGTGGAGG AAAGGTTAAATGTATTAGGTTCGTACTTTTCAATCTTCTTAGGTTAACAAAGAATGATATTTTG GGTTTCTTCCCTGAAGGTTTTGTGTCCCTTTTTATAGGCATACTATCTTCTTGCCAGGATAAGG ATATTGTTCTTGAATCGTTGAATTTTATTTTCACAGATGAGGTATAAGCTATTGATTGTTTCTT CTTTCATGATTCCATTGGAAGGTCATGGACGAATTTGTAGTTCTATGCTAACTACCTGTAAGTT ATATACATATCTCATTTGCTTATCTTGCTTGTCAGGTGCGCAATCAAGATGCATATCTTGTCCT TCGAAGTGTTATTATTGACGCACGTGAAACTGCATGGTCCTGGTTGAAGGTATCAGTGTGTTGC ATTATATATTATTGTTGATATTATAAATATTAAAGTTTTAACTATATATATTAAAATCAGATAA AAATAAAAGTCCATGTTAGAAACAACTTTCTAACTATTAATTTCGAATTTCAGAAATAAATAAA AATCGAGAGTCCAAGATAAGTACAGCTTCGTATTTATTAATTCTAAATTCTGGAAAAACTAGAG AGTCCACAATTTTATAAGTGTTCTTATCTAACATGAACTCTCCTATAATCTAGGGTTATGATAA TAGGATCCACCTAATCAATGACCGTCTTTTTGGTTAACATAGAAGCTCCCTTGGAGGCTCAGTG CCCAATTTAGTATAGGGGTAGGGATAGATGTGTTATCGCCACATAAAAATTGTGACGTGATTCA CTTAAGAATTTTGCATGTTTATTCTTCTATAAATCATCAAATATTATGCATGCTTCTACATTCC AAATTATAGTAAATAGCTAAATTCATTGCGCACTTCAATGCTGAAATAATACTCCATAGATACG TACGCTAAGGTGGTGATTATATTTGTAAAGGAAAAAAAAATACTTCCCTACTATCCGCTGAAGC ACTTAATTTTTGTTCTCATCAATTTACCCCCCAACCACACTAGTAGGGAATATCTACTATCTGC TGAAGTGCTTCATTATATTGAATCTCTGTTTGCTCTCTTGTTATACAAGCTAAGTGAAATTGTG TGTGCCCTCCTCTGATCATAATTACTTGATATTTTGGACAAGATCTGGTTAATATTTATGTCAA AATATCGATGTCTTCAGAAGTATTTCATAATCTCGTAAACCTATTGGATTTTAAGAACTTGTTC TGTTACAGAAAATTGTGGCCAAAGTCGTAACTCAAATACCGTGAAAAACTCAAACTTCAAGTAC TTTGACCAGAGGGAATATGATAATAGATGATCGCTTACCGTATGTATGAAATACTTTTGAAAAA TAAATCATGACTTTTTAAAAGTCAGTCTTAGTTACTATGAAACTATACGCAAGTTGCCTCTTAA AGAAAAACCTTTGAATGAAAAATCGAGTGGGATGCCCTTGTTCAGGAATTAAATTTCACGTTTT GTTAACCTCGTGTTCTTTCTATTTCCTTACAAAGAGCTATTATACTATAAGCCAACAGTGGGAT ATTCAAAACATTTTGCTTACATGCCCTATTATGTGAATGCAGGAAAACTGGGATCGTATCACGA AGACATTTGCAGCAAGCGCAATCTTATCGGATTATGTCAAATCTATTGTCACATTGGTATCATA CATCTGCACTTTTCTATTCCCCAATTCCGTATATGTTATTCTGATCGGGCCATTGCTGATCCTT GTTTCTTGGCAGTTCACCTCTAAAGAGAAGGAAGCAGAGATCTCCCAGTTCTTCGCAACCCGCA CTAAGCCCGGGTTTAAGAGGGCACTAAAGCAGAGCCTGGAGAATGTGCGGATCAGCGCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.330747598

Conservation Information
Conserved circRNAs	NA
PMCS	0.330747598

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os09g0362800_circ_g.1

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