Plant Circular RNA Database

Detail information of Os08g0301500_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os08g0301500_circ_g.8
					
						ID in PlantcircBase
						osa_circ_036640
					
						Alias
						Os08circ06323/Os_ciR838
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 12417836-12419240  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							Os08g0301500						
					
						Parent gene annotation
						
							Similar to Sucrose-phosphate synthase 2 (EC 2.4.1.14) (Fragment)
. (Os08t0301500-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os08g0301500_circ_g.9 Os08g0301500_circ_g.10 Os08g0301500_circ_g.11 						
					
						Support reads
						12/19/7
					
						Tissues
						leaf and panicle/root/seed
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0301500-01:4

General Information
CircRNA Name	Os08g0301500_circ_g.8
ID in PlantcircBase	osa_circ_036640
Alias	Os08circ06323/Os_ciR838
Organism	Oryza sativa
Position	chr8: 12417836-12419240 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	Os08g0301500
Parent gene annotation	Similar to Sucrose-phosphate synthase 2 (EC 2.4.1.14) (Fragment) . (Os08t0301500-01)
Parent gene strand	+
Alternative splicing	Os08g0301500_circ_g.9 Os08g0301500_circ_g.10 Os08g0301500_circ_g.11
Support reads	12/19/7
Tissues	leaf and panicle/root/seed
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0301500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCTGGTTGAGATTATCAAAAATATTTTTGTGGCTTCAAGCAATGAGAGATTATCTGGTTCTGTT
GGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAGacacttatcatgggtaaccgtgatgtta
ttgatgaaatgtcaagcacaaattcagctgttttgacatcaatactcaagttaattgacaagta
tgatctat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 176
Transcript exons: 12417836-12417957,12419187-12419240
ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA
CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAAGATTA
TCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAG
Transcript length: 212
Transcript exons: 12417836-12417936,12419130-12419240
ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA
CATCAATACTCAAGTTAATTGACAAGTATGATCTATACAAGATGCTAACCTGGTTGAGATTATC
AAAAATATTTTTGTGGCTTCAAGCAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAA
CATCCCGAGCAATATCAGAG
Transcript length: 327
Transcript exons: 12417836-12417999,12419078-12419240
ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA
CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAGCACCA
TAAGCAATCTGAAGTTCCAGATATTTATCGTTTAGCGCCATCTTTGCGAAGAAGGAAACACATT
GTAGTCATTGCTATAGATTCTGTGCAAGATGCTAACCTGGTTGAGATTATCAAAAATATTTTTG
TGGCTTCAAGCAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAAT
ATCAGAG
						
					

						Genomic sequence
						
							ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA
CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAGCACCA
TAAGCAATCTGAAGTTCCAGATATTTATCGTTTAGCGGCAAGAACAAAGGTAGTCAAATATTAT
ATCTTCATATGTTGAAATGTTTCATATGGTTTCTGCAATAAGTATTCTAGTGGACTCTTGACAT
GTGGTTCTTGAGATTAGTTGTATGGTGATCCAGATAAGTGTTGACAATAGGATTTATGATGAGC
CATATGCATTGATAGTTACATAATTGTCATTTTGGATATTTGCTTCCTTTTACCTATCCCAGTT
TTACTTTCAGCAAGGAACTGATTATGCTGCTTCTATGCTTCTTTATGCCAGCCTCAATCACATC
TTCATGTTTGAACTAATTATTGTTTGAATCTTATCAATTTCAGGGGGTGTTTATCAATTGTGCT
TTTATCGAGCCATTTGGACTAACCTTGATTGAGGTTATGTACTGCTGTGGGATTTCCTGTTGTT
GCTCAACTTTATATGTGAATTAATATGCTTATGCAATCTTAACATCTTGTTGGTTGGCAGGCTG
CTGCTTATGGTCTACCAATGGTTGCTACTCGAAATGGTGGGCCCGTTGATATACATCGGGTACT
GTGGCCCAATCCTTATTATACATTTTTGCTGAAACTAAATGCTCCAGTTGTTGGTGTCATACAT
ATTTCTCTTATTCTGATCATGTTTGTTTGTTCAGGTTCTTGACAATGGTATTCTCGTTGATCCC
CACAATCAAAATGAAATAGCTGAGGCACTTTATAAGCTTGTTTCTGATAAGCAGTTGTGGGCAC
AGTGCCGCCAAAATGGTCTGAAAAATATTCATCAATTTTCTTGGCCTGAACATTGCAAAAACTA
TTTGTCACGGGTTGGTACACTCAAGCCACGACATCCTCGATGGCAAAAGAGTGATGATGCTACT
GAAGTTTCCGAAGCTGACTCACCTGGAGATTCCTTGAGGGATGTTCATGATATATCTCTTAACT
TGAAGCTTTCCTTGGACAGTGAGAAATCAAGCACAAAGGAAAATAGTGTAAGAAGAAACCTTGA
GGATGCTGTACAAAAGTTGTCAAGAGGTGTTAGTGCCAACAGAAAGACAGAGTCTGTTGAGAAT
ATGGAGGCTACCACAGGCAATAAATGGCCATCTTTGCGAAGAAGGAAACACATTGTAGTCATTG
CTATAGATTCTGTGCAAGATGCTAACCTGGTTGAGATTATCAAAAATATTTTTGTGGCTTCAAG
CAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAG
						
					

			
		

Sequences
Splice junction sequence	CCTGGTTGAGATTATCAAAAATATTTTTGTGGCTTCAAGCAATGAGAGATTATCTGGTTCTGTT GGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAGacacttatcatgggtaaccgtgatgtta ttgatgaaatgtcaagcacaaattcagctgttttgacatcaatactcaagttaattgacaagta tgatctat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 176 Transcript exons: 12417836-12417957,12419187-12419240 ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAAGATTA TCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAG Transcript length: 212 Transcript exons: 12417836-12417936,12419130-12419240 ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA CATCAATACTCAAGTTAATTGACAAGTATGATCTATACAAGATGCTAACCTGGTTGAGATTATC AAAAATATTTTTGTGGCTTCAAGCAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAA CATCCCGAGCAATATCAGAG Transcript length: 327 Transcript exons: 12417836-12417999,12419078-12419240 ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAGCACCA TAAGCAATCTGAAGTTCCAGATATTTATCGTTTAGCGCCATCTTTGCGAAGAAGGAAACACATT GTAGTCATTGCTATAGATTCTGTGCAAGATGCTAACCTGGTTGAGATTATCAAAAATATTTTTG TGGCTTCAAGCAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAAT ATCAGAG
Genomic sequence	ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAGCACCA TAAGCAATCTGAAGTTCCAGATATTTATCGTTTAGCGGCAAGAACAAAGGTAGTCAAATATTAT ATCTTCATATGTTGAAATGTTTCATATGGTTTCTGCAATAAGTATTCTAGTGGACTCTTGACAT GTGGTTCTTGAGATTAGTTGTATGGTGATCCAGATAAGTGTTGACAATAGGATTTATGATGAGC CATATGCATTGATAGTTACATAATTGTCATTTTGGATATTTGCTTCCTTTTACCTATCCCAGTT TTACTTTCAGCAAGGAACTGATTATGCTGCTTCTATGCTTCTTTATGCCAGCCTCAATCACATC TTCATGTTTGAACTAATTATTGTTTGAATCTTATCAATTTCAGGGGGTGTTTATCAATTGTGCT TTTATCGAGCCATTTGGACTAACCTTGATTGAGGTTATGTACTGCTGTGGGATTTCCTGTTGTT GCTCAACTTTATATGTGAATTAATATGCTTATGCAATCTTAACATCTTGTTGGTTGGCAGGCTG CTGCTTATGGTCTACCAATGGTTGCTACTCGAAATGGTGGGCCCGTTGATATACATCGGGTACT GTGGCCCAATCCTTATTATACATTTTTGCTGAAACTAAATGCTCCAGTTGTTGGTGTCATACAT ATTTCTCTTATTCTGATCATGTTTGTTTGTTCAGGTTCTTGACAATGGTATTCTCGTTGATCCC CACAATCAAAATGAAATAGCTGAGGCACTTTATAAGCTTGTTTCTGATAAGCAGTTGTGGGCAC AGTGCCGCCAAAATGGTCTGAAAAATATTCATCAATTTTCTTGGCCTGAACATTGCAAAAACTA TTTGTCACGGGTTGGTACACTCAAGCCACGACATCCTCGATGGCAAAAGAGTGATGATGCTACT GAAGTTTCCGAAGCTGACTCACCTGGAGATTCCTTGAGGGATGTTCATGATATATCTCTTAACT TGAAGCTTTCCTTGGACAGTGAGAAATCAAGCACAAAGGAAAATAGTGTAAGAAGAAACCTTGA GGATGCTGTACAAAAGTTGTCAAGAGGTGTTAGTGCCAACAGAAAGACAGAGTCTGTTGAGAAT ATGGAGGCTACCACAGGCAATAAATGGCCATCTTTGCGAAGAAGGAAACACATTGTAGTCATTG CTATAGATTCTGTGCAAGATGCTAACCTGGTTGAGATTATCAAAAATATTTTTGTGGCTTCAAG CAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007653* osi_circ_017750 						
					
						PMCS
						0.497225854

Conservation Information
Conserved circRNAs	osi_circ_007653* osi_circ_017750
PMCS	0.497225854

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os08g0301500_circ_g.8

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