Detail information of Os08g0301500_circ_g.9


General Information
CircRNA Name Os08g0301500_circ_g.9
ID in PlantcircBase osa_circ_036641
Alias Os_ciR5002
Organism Oryza sativa
Position chr8: 12417836-12421224  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os08g0301500
Parent gene annotation Similar to Sucrose-phosphate synthase 2 (EC 2.4.1.14) (Fragment)
. (Os08t0301500-01)
Parent gene strand +
Alternative splicing Os08g0301500_circ_g.8 Os08g0301500_circ_g.10 Os08g0301500_circ_g.11
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0301500-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACTTCAATCGAGGGATATGGTCCAGATAACCTTAAGTCAGCTCTACAACAATTTGGTATACT
GAAAGACAATGTTTAACTTTGAGAGAAATCAAGTAGacacttatcatgggtaaccgtgatgtta
ttgatgaaatgtcaagcacaaattcagctgttttgacatcaatactcaagttaattgacaagta
tgatctat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1637
Transcript exons: 12417836-12418012,12418327-12418380,12418472-12418534,12
418638-12419549,12419650-12419777,12420922-12421224
ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA
CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAGCACCA
TAAGCAATCTGAAGTTCCAGATATTTATCGTTTAGCGGCAAGAACAAAGGGGGTGTTTATCAAT
TGTGCTTTTATCGAGCCATTTGGACTAACCTTGATTGAGGCTGCTGCTTATGGTCTACCAATGG
TTGCTACTCGAAATGGTGGGCCCGTTGATATACATCGGGTTCTTGACAATGGTATTCTCGTTGA
TCCCCACAATCAAAATGAAATAGCTGAGGCACTTTATAAGCTTGTTTCTGATAAGCAGTTGTGG
GCACAGTGCCGCCAAAATGGTCTGAAAAATATTCATCAATTTTCTTGGCCTGAACATTGCAAAA
ACTATTTGTCACGGGTTGGTACACTCAAGCCACGACATCCTCGATGGCAAAAGAGTGATGATGC
TACTGAAGTTTCCGAAGCTGACTCACCTGGAGATTCCTTGAGGGATGTTCATGATATATCTCTT
AACTTGAAGCTTTCCTTGGACAGTGAGAAATCAAGCACAAAGGAAAATAGTGTAAGAAGAAACC
TTGAGGATGCTGTACAAAAGTTGTCAAGAGGTGTTAGTGCCAACAGAAAGACAGAGTCTGTTGA
GAATATGGAGGCTACCACAGGCAATAAATGGCCATCTTTGCGAAGAAGGAAACACATTGTAGTC
ATTGCTATAGATTCTGTGCAAGATGCTAACCTGGTTGAGATTATCAAAAATATTTTTGTGGCTT
CAAGCAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAATATCAGA
GGTACATTCTTTGCTAACATCTGGGGGCATAGAAGCTACTGATTTTGATGCCTTCATATGCAAC
AGTGGTAGCGATCTTTGCTATCCATCCTCAAATTCTGAAGACATGCTTAGCCCTGCAGAGCTCC
CATTTATGATTGATCTTGATTATCACACTCAAATTGAGTACCGTTGGGGTGGAGAAGGTTTAAG
GAAGACACTAATTTGTTGGGCAGCAGAAAAAAGCGAGGGTGGTCAAGTGGTACTTGTAGAAGAT
GAAGAATGTTCATCCACTTATTGTATTTCATTTAGAGTGAAGAATGCTGAGGCTGTACCTCCTG
TGAAAGAGCTTAGGAAGACAATGAGAATTCAAGCACTGCGCTGTCATGTTTTGTACAGTCATGA
TGGTAGCAAGTTGAATGTTATTCCTGTTTTAGCATCACGATCGCAGGCTCTAAGGTACTTGTAT
ATAAGATGGGGGGTAGAGCTGTCAAATATGACAGTGGTTGTTGGTGAAAGTGGTGATACTGATT
ATGAAGGACTATTAGGAGGCGTGCACAAGACCATTATTCTCAAAGGCTCATTTAATGCTGTTCC
TAACCAAGTCCATGCTGCCAGAAGTTATTCATTACAGGATGTCATATCCTTTGACAAACCAGGA
ATTACTTCAATCGAGGGATATGGTCCAGATAACCTTAAGTCAGCTCTACAACAATTTGGTATAC
TGAAAGACAATGTTTAACTTTGAGAGAAATCAAGTAG

Genomic sequence ACACTTATCATGGGTAACCGTGATGTTATTGATGAAATGTCAAGCACAAATTCAGCTGTTTTGA
CATCAATACTCAAGTTAATTGACAAGTATGATCTATATGGCCAAGTGGCATACCCCAAGCACCA
TAAGCAATCTGAAGTTCCAGATATTTATCGTTTAGCGGCAAGAACAAAGGTAGTCAAATATTAT
ATCTTCATATGTTGAAATGTTTCATATGGTTTCTGCAATAAGTATTCTAGTGGACTCTTGACAT
GTGGTTCTTGAGATTAGTTGTATGGTGATCCAGATAAGTGTTGACAATAGGATTTATGATGAGC
CATATGCATTGATAGTTACATAATTGTCATTTTGGATATTTGCTTCCTTTTACCTATCCCAGTT
TTACTTTCAGCAAGGAACTGATTATGCTGCTTCTATGCTTCTTTATGCCAGCCTCAATCACATC
TTCATGTTTGAACTAATTATTGTTTGAATCTTATCAATTTCAGGGGGTGTTTATCAATTGTGCT
TTTATCGAGCCATTTGGACTAACCTTGATTGAGGTTATGTACTGCTGTGGGATTTCCTGTTGTT
GCTCAACTTTATATGTGAATTAATATGCTTATGCAATCTTAACATCTTGTTGGTTGGCAGGCTG
CTGCTTATGGTCTACCAATGGTTGCTACTCGAAATGGTGGGCCCGTTGATATACATCGGGTACT
GTGGCCCAATCCTTATTATACATTTTTGCTGAAACTAAATGCTCCAGTTGTTGGTGTCATACAT
ATTTCTCTTATTCTGATCATGTTTGTTTGTTCAGGTTCTTGACAATGGTATTCTCGTTGATCCC
CACAATCAAAATGAAATAGCTGAGGCACTTTATAAGCTTGTTTCTGATAAGCAGTTGTGGGCAC
AGTGCCGCCAAAATGGTCTGAAAAATATTCATCAATTTTCTTGGCCTGAACATTGCAAAAACTA
TTTGTCACGGGTTGGTACACTCAAGCCACGACATCCTCGATGGCAAAAGAGTGATGATGCTACT
GAAGTTTCCGAAGCTGACTCACCTGGAGATTCCTTGAGGGATGTTCATGATATATCTCTTAACT
TGAAGCTTTCCTTGGACAGTGAGAAATCAAGCACAAAGGAAAATAGTGTAAGAAGAAACCTTGA
GGATGCTGTACAAAAGTTGTCAAGAGGTGTTAGTGCCAACAGAAAGACAGAGTCTGTTGAGAAT
ATGGAGGCTACCACAGGCAATAAATGGCCATCTTTGCGAAGAAGGAAACACATTGTAGTCATTG
CTATAGATTCTGTGCAAGATGCTAACCTGGTTGAGATTATCAAAAATATTTTTGTGGCTTCAAG
CAATGAGAGATTATCTGGTTCTGTTGGTTTTGTTTTGTCAACATCCCGAGCAATATCAGAGGTA
CATTCTTTGCTAACATCTGGGGGCATAGAAGCTACTGATTTTGATGCCTTCATATGCAACAGTG
GTAGCGATCTTTGCTATCCATCCTCAAATTCTGAAGACATGCTTAGCCCTGCAGAGCTCCCATT
TATGATTGATCTTGATTATCACACTCAAATTGAGTACCGTTGGGGTGGAGAAGGTTTAAGGAAG
ACACTAATTTGTTGGGCAGCAGAAAAAAGCGAGGGTGGTCAAGTGGTACTTGTAGAAGATGAAG
AATGTTCATCCACTTATTGTATTTCATTTAGAGTGAAGAATGCTGAGGCTGTATGTTTCTTTTC
GTCCTGTTAGCCACTTCTCATAGCCTTCTGATTTTCTCGGACATTTTGTAAGTTACCTGATGTT
TTATGATTTTCATGTGTTTCAGGTACCTCCTGTGAAAGAGCTTAGGAAGACAATGAGAATTCAA
GCACTGCGCTGTCATGTTTTGTACAGTCATGATGGTAGCAAGTTGAATGTTATTCCTGTTTTAG
CATCACGATCGCAGGCTCTAAGGTCGACTTTCTTTGTTCAACTGCTCTTCCATTTTTTCTCCTC
ATGTTGCCATGTTCCTCATTGGAGCAAAATATTATACTCAGTTTTCCACTAAATAAAGTTTACA
TATAATTTTCATTCCGCAAAGTAAACAAGTAAAGACTTAGATAACATATATTTTTTATTGCTAT
ATTTGGTCATATATACTCCCATCAATATTTATTTTTGTGAGTGTTAACATCATATACTCAGTTT
CCAATTCTAAAGTTTGATCACTGTCTTTCCTGATAATAAATCCATAAAAATTAAATGTATAACT
ACATGAACGTATTTTTATGAAAATGTACTAATCATTTTTTTCATGTATAAAATCTAACCTTTTT
GCATATAGTAGCAAGTTAAGATTTTGAGGATTAGCCTAAAGAGCGAAAATTAATCTTAGTGGAA
ATCTGTCACAAACAATATTTTGTTTGTTCTTGTAAGAGCATGTATTGTAGTCCCGTCTGAACAT
GCAAGCCATTATTGACTTTTCATGGTCCCCAATCAAAGACTTTGACAAAAGTTCTGAATTGTGC
TTTACCAGTAAAAATAATAGGATTTTGCTAGACAATTTTAGTACTATTTGTTCTCATATACTCC
CTCCGTTTCAGGTTGTAAGACATTTTGACTTTGGTCAAAGTTAAACTGCTTTAAGTTTGACCAC
GTTTATAGAAAAAAGTAGTAACATTTTCAACCCAAGATAAATTTATTTTGAAAATATATTCAAT
TATTGATTTGATGAAACTAATTTAGTATTATAAATATTACTATATTTGTCTATAAACTTAGTCA
AACTTGAAACAGTTTGACTTTGACTGAAACGGAGGGAGTAGTCAATTTATATGGTCGAGATACA
TGAATGATTGAAGTTTTAGGATCGTGAGTGCACAATTTCCAGGGTTACCATAGGAATTAACAGG
GGATTCATATAAACAAAACAGAAGTTGGAATTGCAAAAAAATAGTTGTCTTGTAGTGTCGCCAT
AAAGTCTGAATATGTCTTTGAGAGCAATCGACCTCTCATATTTCAGCATGAAACTTATGCAGTA
TCATCTATCAACTTTGTTTTCAGCCTTTTCAGCTTCCCTATACTACGGATGTGACAATCTATGT
TTGCTCTCTTGTAGGTACTTGTATATAAGATGGGGGGTAGAGCTGTCAAATATGACAGTGGTTG
TTGGTGAAAGTGGTGATACTGATTATGAAGGACTATTAGGAGGCGTGCACAAGACCATTATTCT
CAAAGGCTCATTTAATGCTGTTCCTAACCAAGTCCATGCTGCCAGAAGTTATTCATTACAGGAT
GTCATATCCTTTGACAAACCAGGAATTACTTCAATCGAGGGATATGGTCCAGATAACCTTAAGT
CAGCTCTACAACAATTTGGTATACTGAAAGACAATGTTTAACTTTGAGAGAAATCAAGTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.502812354
Functional Information
Coding potential Y
Potential coding position 12417848-12421160(-)
Potential amino acid sequence MISVYLISLKVKHCLSVYQIVVELT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015