Detail information of AT2G03510_circ_g.2


General Information
CircRNA Name AT2G03510_circ_g.2
ID in PlantcircBase ath_circ_012682
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1068028-1068517  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G03510
Parent gene annotation Expressed protein
Parent gene strand +
Alternative splicing AT2G03510_circ_g.3 AT2G03510_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G03510.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGTTGACTGAGAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGA
CCGTCAAAAGAGTCTCGCGGATGCAGATTACTACCGattgatgaacgaatgaaagatgctcttc
aagctgattgtacacgttatgctccaggaattgagattcttagtgtgcgtgtcaccaagccgaa
aattccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGATGAACGAATGAAAGATGCTCTTCAAGCTGATTGTACACGTTATGCTCCAGGAATTGAGA
TTCTTAGTGTGCGTGTCACCAAGCCGAAAATTCCAGAGAGTGTAAGGCGTAACTTTGAGCAAAT
GGAAGAGGAACGTACCAAGGTAAATTCCTTTTGAACCTTGTCCTTGGCAATTCAATCTGCACTG
GTTTGCTCATATCATCAATTCCGTTATAATGGACTCTGGACGCTTTAAGATTGCTTATACAATT
GGAATGAATGATTTTGAAGGTCTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCA
GAGACAAAGAAAATAATGGCCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGA
TGCAACAGAAGTTGACTGAGAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTA
CCTTGACCGTCAAAAGAGTCTCGCGGATGCAGATTACTACCG
Conservation Information
Conserved circRNAs NA
PMCS 0.212815085
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017