Detail information of BGIOSGA033172_circ_g.8


General Information
CircRNA Name BGIOSGA033172_circ_g.8
ID in PlantcircBase osi_circ_008549
Alias Chr10:20390126_20390676(MH63RS2), Chr10:20844052_20844602(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17418074-17418624  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033172
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA033172-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTCCTTGCTATCTTTAAGGCATTCGTGGTTGTCTTGTTCGAAGATGTGCTGGCAATGTTGAT
CTATTGAATGTGCTAAGAGAATTCGAATCAAAGAAGgattggcaaacttgaagacactcggaac
cgtactctgcatggtattttaagggttcaaagctgtttcagagggcatcaagcccgtcgccatg
caagggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGGCAAACTTGAAGACACTCGGAACCGTACTCTGCATGGTATTTTAAGGGTTCAAAGCTGT
TTCAGAGGGCATCAAGCCCGTCGCCATGCAAGGGAACGAATAAGAGGAGTTTTGGCTCTTCAAT
CATGTACTTCCAAACTATTACAATTATATGTTGTATCTGTTCCATTTTCTTGTTGCTATAACTT
CTCTCTCAGCTTACAATTCACCCTTCTTATCTTGTAGTTATTCGAGGTGAGAATGCAAGAAAAA
TGTATTCGTCTCTGGCGAGGAAACACAGGGCAGCCATTATTTTACAGAGAAATCTAAAATGCTG
GCTTGCAAGAAGATATTTCGTTAACATACGGAAGGCTTCAGTAGTAATACAATCTGGTAAGAAG
ATCCTTGACATCGTCATTTAGAACTTCACATGGGACTATGGAAGTGGTAATCTGGATTACTGAT
TATGGTTCCTTGCTATCTTTAAGGCATTCGTGGTTGTCTTGTTCGAAGATGTGCTGGCAATGTT
GATCTATTGAATGTGCTAAGAGAATTCGAATCAAAGAAG
Conservation Information
Conserved circRNAs osa_circ_007221
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021