Detail information of BGIOSGA015373_circ_g.1


General Information
CircRNA Name BGIOSGA015373_circ_g.1
ID in PlantcircBase osi_circ_014215
Alias Chr04:13389768_13391171(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 11700427-11701830  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015373
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA015373_circ_igg.1 BGIOSGA015373_circ_igg.2 BGIOSGA015373_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015373-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACAAATGAATTTGATGGAGTGGAAGGTTCTGAGACAAATGTTGGGGGGAGAAATTCTTGTGA
CCTTCTTCGTTTTAATGATGTGGAATTTTTTATCACccggaatgctactgggaaatgtaaggtc
tttgtgcagtatgttataaaatgtctttttcctgttctttcctcggaaaggtgtccgcccatac
agcatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGGAATGCTACTGGGAAATGTAAGGTCTTTGTGCAGTATGTTATAAAATGTCTTTTTCCTGTT
CTTTCCTCGGAAAGGTGTCCGCCCATACAGCATCTCATACAATAGAATTCCTATAGCATGGGAA
TTGATGTTAGCTGGATGTCATCTTATTATTAGCATAATGCATATCAAACAATATAATAATGCCA
TATCAAACAAGTTCTCATGGTTAGGTACTTAGGTGTACCTGAAAACACATATCTAGTACTTACA
CATCTTATAATTATCTAGAGAGACTAGGGATGTATTGGTGTGGTAGATACATATACAGATCTCA
GAAATAAACACATACGGAGGGCAGTGTACCTTCGGGTGCTTCTAGGCATTTGACATCTAAGCAG
CATGGTTCAATTGACACATGGAGAATTTGGATAGGTTGGAGTCAGCACATAAACCCACATGTTC
TAATCATAGCACCTACCGGTACCTTTTACACGGAGGCCACTTCCATGGAAGGGCTAGGCATGAG
AGGATTTTTAGAAGGGATATTACACCATTCAATTTTATGTTTGTTTTGATCCCTGTTATCTAGT
TAAACTGACTAACCTACTTAATGTGATGTAAATTAAAAAAGTGTGATATAGATCAGTTATAGCA
GGCAAAAGTTTGCTGCAGTGCAACTTGTGACATGAGTTTTGTTTAATTATGCATAGCAGTGTAG
CACAAAACAATTAACTTAACCGCTAATTATTTAGTCAAAGTGGTAATATGGACTATTCTCTGGG
TGGAAACCCATGTTCAAAATCTTGTTTGAATGGCACATGGATTATTATGAATAATTTGATGAGA
TTTTAGTTGAACCTCAAACATCTTTTAGGTGATTGCTATAAGACTATACCAACTACCAAGAAGA
TCGAATAAATAAAACTAACTCTTTTAATCCATTCTGTGCAATTCTTGTAATCAACTAGTTCATA
AGATGACCCAAAAAAATATATTAGGTTATTGCTTACCGAGAGCCCACCAATCGATTGCACTTGT
ATGCCCTGCACCCGTTATAACCTCCTAAAACGATGCAAAAGTTAGACAACAATCATGCTACTTG
CTGAGAAAGAATCAAAGACTAACATTGACAACAAGCGGTTTCGTAAGATGAACTGAAAAATGAA
AAGCATACATGTAAAATTAACTAAAAGATAAAAAGGCTAAACCTGGGTCTTATGATAATGCATA
TCAAGTTGAAATTAAAACAATTACTCCAACAATAAGCATAAAGAAAACACAAGGATCATTCTTA
CTGGAGCGATATACTCTTCAGTACCAACAAATGAATTTGATGGAGTGGAAGGTTCTGAGACAAA
TGTTGGGGGGAGAAATTCTTGTGACCTTCTTCGTTTTAATGATGTGGAATTTTTTATCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021