Detail information of BGIOSGA016653_circ_igg.3


General Information
CircRNA Name BGIOSGA016653_circ_igg.3
ID in PlantcircBase osi_circ_014483
Alias Chr04:25007904_25009539(MH63RS2), Chr04:25030052_25031687(ZS97RS2), Chr04:25007904_25009539(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 22945838-22947473  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016653_circ_g.1 BGIOSGA016653_circ_igg.1 BGIOSGA016653_circ_g.2 BGIOSGA016653_circ_igg.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTGGCTGTTGGAAATGTTATAGCTTCAGGAAGCAAGGCTGCTGACCTTGTGATCTCTTATCT
TGAATCTTGCACAGATCAGGACAATTAGCATTTAAGggtcgattatctaccactatctctcatg
gtaacagcttttaagaaggaagatgtcaaaaaaccattggaaggatttggtgccttgataccct
ataaggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCGATTATCTACCACTATCTCTCATGGTAACAGCTTTTAAGAAGGAAGATGTCAAAAAACCA
TTGGAAGGATTTGGTGCCTTGATACCCTATAAGGAACAGCAAAAGCATGGTCTCAAAACCCTTG
GTAGGTTAATTCAGCTTTACACTTATATTTTATCCAGCTTGTAGCTGCTTATATTTTGATTTGC
GAATTAAAAATTATTAAAACAGCCTTGAAAGAAGAAACCATGTTCGCTGTGGAGACTAGAAATT
CCCACATTAATTGGGGAAAGAGAAATATTTACACCCTATGATTTTGGCAAGTGCAAGTTTTAAT
GGTTGAGATTGATGGATTGAATATATATCATATTTGGACTCAGTATGAACAAATACCAGATACG
TAAATAGATAGTACTAATTCAACATGGATCTGAACTGTTGATCAGACCAATTGAGCACTTGGTT
GTAATTGCTCGCGGACTACACGCTTACTGCCTGACTAGGGTTCCATGATGATAAGGTTCGATTT
TCTAAAATACTATTACAACAAGATGACTATTTAATAAAATTTAAAGAGAATAACGTATATAAAA
ATTTAGATAAATTTGGTGCACCGCGCAATTGCGCAGGTCACCCTGCTAGCTGTATTGAACTCAA
TATACAAATCAACCTTGCTACATTGCTCTACTTTTTCTCAGGTCTTATTTACTCTGATTTCTAT
TTATTCTAATCTATACATGTCGTCTTGTACAGGGACCCTCTTCTCCTCGATGATGTTTCCAGAT
CGAGCTCCTAATGATCAATATCTATATACATCTTTCATTGGGGGGAGCCATAATAGAGACCTCG
CTGGGGCTCCAACGTATACTTCCATATTATGATCATTTATGTTTTGGTTGTTTTTTCTTTTCTT
GCTAGATTTTTCTGATATATATACTTATGTAGGGCTATTCTGAAACAACTTGTGACCTCTGACC
TAAGAAAGCTCTTGGGTGTTGAGGGACAACCTACTTTTGTGAAGTAAGTGATAAGAAACTACTG
CCATGGTTTAGAGTATCTATATGTTTTCTCTTGTTGTGCTTGTGTTATGGTTTTCCATCACTAT
GGAGTTTTGAGGATTCATTCAGGTTTTTGCACTACCACTTGCGAATTCAATATGATGTTCTTTT
ACACAGGCATGTACATTGGAGAAATGCTTTTCCTTTATATGGCCAGAATTATGATCTGGTACTG
GAAGCTATAGCAAAAATGGAGAACAATCTTCCAGGGTTCTTTTACGCAGGCAAGTCAATGAAGG
CACCCCTATTGTACAAAAGAAATCTTAGATATTTGAAACATATTCCTGTTGATTGAGTACGTGA
ATAATTTGCTGTTTCTAGTAAGTCAATTTGGTATTTCTCATGCAACTTATGGGGCTCCTTGATT
TGCTGAGAATGATGAGTTTCCTAGAGCAAGCCAGGAACTGTAATCCCAGCATGTAATACTTTAC
CTTGAAATTAACTTCAAAAAAATAATTGAAGCTTTTTCTGTATCTGTAGGAAATAACAAGGATG
GGTTGGCTGTTGGAAATGTTATAGCTTCAGGAAGCAAGGCTGCTGACCTTGTGATCTCTTATCT
TGAATCTTGCACAGATCAGGACAATTAGCATTTAAG
Conservation Information
Conserved circRNAs osa_circ_024325
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021