Detail information of BGIOSGA021885_circ_g.1


General Information
CircRNA Name BGIOSGA021885_circ_g.1
ID in PlantcircBase osi_circ_016684
Alias Chr06:2647310_2647638(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr6: 3321465-3321793  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA021885
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021885_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA021885-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGTCCCATCCCACGGTAGGAGTACAGGATGTTGGCCAAAAGCTTTGAAGCACCAGCAATAGA
GATCCTCCGCTTGTTCGCGAGCTCATGGAGTCGGCAcccctcgtccaagataccataggcatac
agagaacctgatccaacagagaatcggcttcccatgagccttgcgccctcactatcaacatagt
acaagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCTCGTCCAAGATACCATAGGCATACAGAGAACCTGATCCAACAGAGAATCGGCTTCCCATG
AGCCTTGCGCCCTCACTATCAACATAGTACAAGCCAGGACCCTAGATCGAGATAGAACACATTA
AGTATAGAGTAGCACACAGCACATAAACTTAAGACTTCTAATCAAAGGCATGTAGGCTGAATTC
ACCTTCTCATCCCATCCAGCAATCATTGTACCAATTGACAGTCCCATCCCACGGTAGGAGTACA
GGATGTTGGCCAAAAGCTTTGAAGCACCAGCAATAGAGATCCTCCGCTTGTTCGCGAGCTCATG
GAGTCGGCA
Conservation Information
Conserved circRNAs osa_circ_029723
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021