Detail information of Zm00001d018060_circ_g.3


General Information
CircRNA Name Zm00001d018060_circ_g.3
ID in PlantcircBase zma_circ_002145
Alias circ999
Organism Zea mays
Position chr5: 213515271-213519786  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRI
Parent gene Zm00001d018060
Parent gene annotation Exocyst complex component SEC6
Parent gene strand -
Alternative splicing Zm00001d018060_circ_g.1 Zm00001d018060_circ_g.2 Zm00001d018060_circ_g.4
Support reads 35
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d018060_T012:5
Zm00001d018060_T010:5
Zm00001d018060_T005:4
Zm00001d018060_T013:5
Zm00001d018060_T004:3
Zm00001d018060_T011:5
Zm00001d018060_T002:5
Zm00001d018060_T009:5
Zm00001d018060_T015:5
Zm00001d018060_T006:5
Zm00001d018060_T014:5
Zm00001d018060_T003:5
Zm00001d018060_T008:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATAAATTTTATTTGGAAAATATATTCATTGACAATTTTATATTAAAGCAAAAATTGAAGAAT
GAGATGTACCTCAAAGCTCGAACCAATGTCTGAGGAcctaggaggaaagcatggtgcaacataa
tcatatatatcgccaagctcatctccaatctgtgttgcaatagaagcaaagtagcaagctataa
gccaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTAGGAGGAAAGCATGGTGCAACATAATCATATATATCGCCAAGCTCATCTCCAATCTGTGTT
GCAATAGAAGCAAAGTAGCAAGCTATAAGCCAAAAAGATTGATAAGGTAAACCAAGGTAAGTAC
ATTTTCTAAAAAAACATCAGGTACTTCTTTTTACACCCCGAATTACAGAGCCAGTAGGATGGTG
AGTCCCCCCCCCAAAAAAAAATCACATGTGCGCATTAGTCACAAAAGAAAGGTGGCAACCACTT
CTAAGCTCGCTTGTCACATGTTATGCCTATATATATTTAGATTTGTTATATGGAAATAGTATGC
ATAAATTGTCTTGAGATGCACCTAATATCACAATTAATTTGGTTTTCCACATATATAATGAGCA
AAATTGTTTTGGGGCCCATGTCTGTTCAAAACAGTACTCTTTTCTGTGACGAGGAATATTTATA
GAGAAGACCAACAACAACATTTCCCCTCATGCATGACAAATAGGTTTTAATTAGCTGATAGTAT
TATATGGTCCAGTCTGAACTGTGAATTTTTGTGTAACAGGTTAGTAACACTAATTAGCAAACAT
GTGTTGAGCATGACAGCTTCACCGTCATGAATCATGTAACTCATAAGTCTAGAACTCACAGAAG
TGCATTCAATCAATCAATAACCAAAACTAAGAAATAGAGTTCTTACAGCTTTGGCTTCCTCCAA
AGCTTCCATCAAGTCCTCCACAAAAACAAGCTGCATGATGAAAATATTAGCTACTGCTGTTCAT
GAATTGCAATACTAGATCCTAAAATCCAGGATTGACTCAAGTAATACCTCAGTAAGCAACTTGT
TGAAGCGGGCCTCAACAGCCATCCTGATAGACTCATAGCATTTGTCCTTGTAGCCCTTTCCCTG
AACCTTCGATTTTTCTTGAGTGCCCTTTCTTGGGGTAACTGTTGCCCCTGCACCTTTTCTGCTA
GCAATGGGAAGGCCAGCAAAAAATCACTGGTAACCTGATAAGAGGTTTCCTTTGGGCTGGAAAG
GAAATTGCTAATAGGGGGGGGATGTTTAATGGCCTGGTATAAAGTTACGAGACCTATACAGTTT
GGTAGTCTCGGCATACTCAACCTCTAAATTATGGGCTGGTCTCTAAGGATATATGGCCATGACT
CACAAAATTGGTGCCTCTCAGCCTTGGGCGGAACTGCCATTTCATGTCTCACAAAAGGAGGGGG
CTTTCTTCCATATGGCAGTTGAAACTCATGTTGGAAATGGGGAGAATACTTTGTTTTGGAGGGA
CAGGTGGCTGGAAGGGGGAGTCCATACAGGAACTTGATCCCAATCTTTCAAAACCATTCTGGAA
GAATCAGTAAGAAGAGAACAGTTGCTCAAGGCCTTTTGGATAGGAAGTGGGTGTCTGATATGAG
GAGAGCCCTCACAGTCCCGGTGATCCTAGAGTACTTTCTTCTATGAGACATCCTATATGATTTT
GTTCTTCAACCCAGGATTGCTAATAAACATCGTTGGAGGCTTGATGGATCTGGATCATACTCAA
GCCAGTCAGTGTATAATGCCATTTTTCAGTGATCAATCAGGTTTGCCCCATGGAAAAGGACCTA
GAAAAGCTGGGCTCCGCCCCAATTCAGATTCTTCATGTGGTTGGTGATCAAGAATAGACGTGCG
CAGGAGACGCGCATTGATGGAGTCAACAGCGTGTAGATGCAACGACGAGGATGACAACAGACAG
CGATGTTACTGCCCGAGGAGGCGACGCAGCGACGGCCCTCTTGCTTGGCAAAGCATCGCGCGAT
GGACGACAAACGTCTCAGGAGGGTGGTTCGCTCGCGATCGGTTGATCAGGCCAACAGCGTGAGA
GGCAGAGACGACAATGGTGATGTCGATGGTGGAGCCTCCCTATCGGTGGTGGCGACGACGAGCC
GACATAGATGGACGTGCATACGAAGAGGCACGACATAGGCAGGCGTTTCGGTTATGTCGCAGGC
CACGCCAGTTGCACCGTCGAAGAAGATGAAGAAGTCGGTGTTGTTGAAGCCGATGTCGAGGATG
CGTGAGTCGACTGGCGATGGGCGATGGAGACGCAAACCCAATCACTGACCGGGAAAACAAAAAA
GACGCAGCAGCAATAGATCTGGTACATCATCGAGGTACCCTAGTGGAGGGATGACCACCAACGC
GGGGAGAAGACGAAGGGCAGCGCGGCGCCAAGGCCGTCGCGAACGAATCGTAGTGTGGAACCAG
GGTGGAGCGAGACCCGACTCGTCCTCCCCACGACGTGTCAGTCCCGAGGACTTCCCAACCATGG
TCTGGTCGACAGCTGAGGTCGCATCCGCCTCCATGGCAGCGTGTGATGTTGCCGACGATGGGGA
TACAGCCCATCACAGTCGCCACCACGACGATGTGCAATGGGCCAGATCCGGTTGGGGTAGTCGA
TGGGAAGGTGGACAGAGGCCGCCGACGGGGCCTTTATGGTGAGTTCCAATCTGGCGTTGTGCTT
GACGACGCGACGACGAACGCAGCGGATCAGATGGATCCACGGCACATCCTACAAGGGTGCTGCC
CCTGGTGGAGATCGATCTCCCCGGGGCCAACGCGGCAGCGGCTGCGGAAGGGAGGCGTGACCTA
AACTCATGATATCATGTAGGAAGGAAGGATTACGTATAATGTGTTGGATGTATTGCATTGAGCC
TCTAGGGAGAATATATAGGAGTACATAACTTAGAGGGCAAGAAGCCTATCCTAGAGATAAGGAA
GGTTATCCTAGATATAAGGAAGGTTATTCCGGGATTACAATCAATCTTAAACCAACCATATCAA
GAGTTGACTAATATACTCTAGCATGCCTAATATACTCTAACAGTTTTTATGTGAGCTGGGTCTT
TGATGGGGCAGGGGGTTATCCCCTCTGTGTACTTCCTCTCTTTTCTTATTAATACAACACACAA
TTCTCTTGCGGGTTCGAGAGAGAGAGACAGACCCTGCTAACTTATAATTATTATTCATTGCTTT
CTCACATATGTTATGACTGGTATAGATATCTTAAGATGATGGACAAAAATGGTGCTGTATAGGG
TCAGACCCTAGAGTCAAAATGATTTAGAATTAGCAGGACCAAAACCGAGTATATGAGATATGAC
TTTGGTACTACAATTAGTGAGGATGGAGATGTAAGTTTGGGAGGTCAGATAGTACCAAAGAAGG
ACACCCTCCGTTATTTGGGATCGATGCTACAGAGAGATATTGATGAAGATGTTAGCCATAGAAT
CAAAGCAGGGTGGATGAAATGACATCAAGCATCGGGAGTCCTATGCGACAAGAGAGTGCCACAG
AAGTTGAAAGGCAAGTTCTACAGGACAGCGATTAGGCCTGCTATGTTATATGGGGCTGAGTGTT
GGCCTACTAAGAGGCGACATATCCAACAACTAAGTGTTGCAGAGATGCGTATGTTGCGTTGGAT
ATGTGGGTACATAAGATTGGACCGAGTGAAAAACGATGACATACGCGATCAGTAGCGCCAATTG
AAGAAAAGCTTATTCAACACCGGTTCAGATGGTTTGGCCATGTCCACCGGAGACCCCTAGAGGC
ACCGGTGCATAGAGGCATCATAAGACGGGACAATAATGTGAAGAGAGGTAGAGGTCGACCAAAC
TTGACATGGGAGGAGGCAATCAAAAGGGACTTGAAGGAATGGAATATCCCAATGGAGCTGTGTT
TGGATACAAGTGCTTGAAAAGAAGCTATCCATGTGCCTGAACCGTGATTAGGCCTTTTCCCTTT
AATGCTCTCAAAAGCTTTTCCCCTCCCCTTTCTCTCTCTTTCTCCTTTTGGTGACATCTTGTTG
GGTTTCAACTCTAGCCTACCCTAACTTGCTTGGGACTAAAAGGCTATGTTGACGTTGATGTTGA
CAGGGTCAAGTTGTGTGATACTAGGAAAGCAATACAATCAATAGTAGAAACAAGTCGTCAGGTC
TTGCAGTTATATTACGTGAAAGGTGGCAAGTGGCATTCTATGATAATGACATGAACATCAGAAA
AATATGAATATGCAGAAACGGCTGAAAGCTTTCCTGTTATCATTATTGCTTGTGAACTCATTTA
CTGAACTCAAGCACAACTGTAAGGTGCATAGATGTGCAAAATGCAAGACATATTTCTACATTAC
ACATATCATAATAGCATAGCATAACATACTGGAAGAACAGAAATTTATCTAGTGAGGAAAAGAA
GTGTACTTTGCAGTTCTACGTTGGTTTGTTATTGTCGCCATAGCACCAGCACCCTCAGCCTCAG
CTGCTTCTTCTGCAACTTGTTGATCTAAGATCTCTTGCATTTCAACAACCCTGATGTATAGTCC
AAAAACAAAATTGATGCAATAATGTAAATTTGTGAATACCATGATATATACCTAATAGAAAATA
AAATAAATTTTATTTGGAAAATATATTCATTGACAATTTTATATTAAAGCAAAAATTGAAGAAT
GAGATGTACCTCAAAGCTCGAACCAATGTCTGAGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.047898422
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b