Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d018060_circ_g.3 |
| ID in PlantcircBase | zma_circ_002145 |
| Alias | circ999 |
| Organism | Zea mays |
| Position | chr5: 213515271-213519786 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ui-circRNA |
| Identification method | CIRI |
| Parent gene | Zm00001d018060 |
| Parent gene annotation |
Exocyst complex component SEC6 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d018060_circ_g.1 Zm00001d018060_circ_g.2 Zm00001d018060_circ_g.4 |
| Support reads | 35 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | CT-TA |
| Number of exons covered | Zm00001d018060_T012:5 Zm00001d018060_T010:5 Zm00001d018060_T005:4 Zm00001d018060_T013:5 Zm00001d018060_T004:3 Zm00001d018060_T011:5 Zm00001d018060_T002:5 Zm00001d018060_T009:5 Zm00001d018060_T015:5 Zm00001d018060_T006:5 Zm00001d018060_T014:5 Zm00001d018060_T003:5 Zm00001d018060_T008:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.047898422 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |