Detail information of BGIOSGA031748_circ_g.1


General Information
CircRNA Name BGIOSGA031748_circ_g.1
ID in PlantcircBase osi_circ_008489
Alias Chr10:19194098_19195098(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15698687-15699687  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA031748
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031748_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-GA
Number of exons covered BGIOSGA031748-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTCTTAACTTTTTTGCTGGAAACCTTAGTTCTTCACGAGGGACATAACCAAAGTCAGTAAA
AAATTCAGCAAGTGATTTTATACCATAACCATCAACcctttcaaaatccctccttctgaattta
acttgaacccattgtcctccacaaatttgttgaacttattgatacttctaatatctgatatcaa
gcgatgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCAAAATCCCTCCTTCTGAATTTAACTTGAACCCATTGTCCTCCACAAATTTGTTGAACT
TATTGATACTTCTAATATCTGATATCAAGCGATGAGTGGAAATTGTGGTATGATTTAGTGCATA
GCCATTAACAAGAGTCCATGCAGCATATTCACTTTCCCTGGTGTCCAAAAGAAAAGAAAGAGCA
AATGTTATTTGAACAAAGAAACAGGAGTACAGAACTGCAAATAGCATACTCAGGGATGCCACTC
AGGATGAGCACAAAAAGGCAATTTAAAGTATTACTGGATTAATAAACGGTTATTTGTTAAACGG
TGTAAAGTTCAGTAAAAAAACTCAAGGTACTATAACAAGTACCTAGATAAAACTTGGAAATCAG
AATAAATGGGCTTCTCCCATGTCAGCTCCCCTGATGTACTTGCAAGAGTTGCATGTTTATTTCC
TTTACCAGAAGTTCTAATGTATTTTTGAATGATGTCCTGCGCAGAAAAACAACCACATAAATGG
GTTTGAGAACAGAAGATATCTTCAAATGAGCAAAGGTGGAAATAAGCGACTCTAGTGGCAACCA
ATATCAGAGACCAGAAATCCAGCATCCATATACTCTATCTGATGCATGGACTGTTCAAATTTAA
GACCTGGTTTCCAAACTAGATTATGTGGCTATAGTATTTGCACTATAGAAATCTGTATTGAAGC
CACCAGACTTATAGTCTGACAGAAACAACATAAAGTTCAATGACAATCCCAGATGCACTCATGC
ACAATAGTTTATAGTGGTACCTGGCTCTGAGGACTCAACTCATCCACAAGTAGTTCTGAAATGA
ATATCCTTGGCAAAGGCCCATAAACACCAGTTCCAGTGTATCCATCATTGGTGGGAGGAGAAAA
CCATAGTGCTCTTAACTTTTTTGCTGGAAACCTTAGTTCTTCACGAGGGACATAACCAAAGTCA
GTAAAAAATTCAGCAAGTGATTTTATACCATAACCATCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021