Detail information of BGIOSGA031748_circ_igg.1


General Information
CircRNA Name BGIOSGA031748_circ_igg.1
ID in PlantcircBase osi_circ_008488
Alias Chr10:18784679_18786317(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15697532-15699170  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA031748_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAAATGGGCTTCTCCCATGTCAGCTCCCCTGATGTACTTGCAAGAGTTGCATGTTTATTTCC
TTTACCAGAAGTTCTAATGTATTTTTGAATGATGTCccttaaatgagaacaagttgaatcccgt
caccatcttacgcatctgtcctgaacttccaagtagcaaaaggctgccttgaactgctgctgtt
caggatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAAATGAGAACAAGTTGAATCCCGTCACCATCTTACGCATCTGTCCTGAACTTCCAAGTAG
CAAAAGGCTGCCTTGAACTGCTGCTGTTCAGGATGTCCACGGAAGTAAACAATTTTGTGGTAGG
ATGTCGTCATTAGAACTGGAATTGGCTAGCATGATATGTTCATTCTAGGACATGAAACCAAGGC
TGATGCTCCAAAAGATACCCATGACATGATGACAACACAGAACAGAACTGTAGAGATAACTAGT
AATTTCTTTATTCAAGAGAGCGATATACATCAAACAGTTTATTCATTCTAATGTTTTAATTTAC
CCAGGTAGATACAGTTATCACAGAGAACACTCCTTCAATACGCTTCCAAGAGGCATGACTCGCT
TCCAGAATAGTTGAGACTTCAACGTTTATGCAGATCTCCGTGTAAGCTGATCATTTGATGTGCT
CTCAAATATTTTGTCCGCATTCCCTACCTCAAAACCATCGCGCCTGTGGTGTTCGTTGACCTTC
AGTAGTTATTAAACAAGTATGGTTGCTTGGTTAGTCGATCAGGAATTTAGGGTTCAGGAAGATA
AACTGATAAGTTTATCGAAACCCCACTCATGCTAAGCAAAATAAATACAGTAAGAATAAAATAT
GCACACCTCATCATTTGGCAAATCTTTGAACTGTGGGAGTACCAGGCGTTCAGCAAATTCAATA
TAGGAACGTGGAATGGATTCAGTGATTCCATCAGCAAAAGTAAACAACGCTGAATCAGCTACAG
TTGAGCTTTGCTGGAGGAGACCATCAGGACTCACTGTTAAAAGGTAGAAGAAATGAGAAAAACA
AGTATGCAAAATAACTTCTCTGCAAATGTGGAATAACAGCAAGGAAAACAAATATGCTTGATAC
TATGTACATAAAAGGAAATTTTGAACCAAAGCTAACAATTAATCATCCTGACTACTATCAACAA
GCTACATAGTTTCTAAAAGCAAAGTCTGTAAAATGTGCAATTAGGTGTAGTTCTCCTAATAAAA
TGTAATTGGATTTTTCCAGTAGAACCAGCTGGGTATAAGAGGAGGTAATTCATTGAGAGCGTTA
TACTATGCATATAGAGGGAGCCACTACTTATTGAATACAATCTGAGTGATCAGAACTTAGGAAC
AGACCTTTCAAAATCCCTCCTTCTGAATTTAACTTGAACCCATTGTCCTCCACAAATTTGTTGA
ACTTATTGATACTTCTAATATCTGATATCAAGCGATGAGTGGAAATTGTGGTATGATTTAGTGC
ATAGCCATTAACAAGAGTCCATGCAGCATATTCACTTTCCCTGGTGTCCAAAAGAAAAGAAAGA
GCAAATGTTATTTGAACAAAGAAACAGGAGTACAGAACTGCAAATAGCATACTCAGGGATGCCA
CTCAGGATGAGCACAAAAAGGCAATTTAAAGTATTACTGGATTAATAAACGGTTATTTGTTAAA
CGGTGTAAAGTTCAGTAAAAAAACTCAAGGTACTATAACAAGTACCTAGATAAAACTTGGAAAT
CAGAATAAATGGGCTTCTCCCATGTCAGCTCCCCTGATGTACTTGCAAGAGTTGCATGTTTATT
TCCTTTACCAGAAGTTCTAATGTATTTTTGAATGATGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021