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circRNA ID
1_circ_ag.7
Alias
ath_circ_000115, 1:265578-266724
Organism
Arabidpsis thaliana
Position
chr1: 265578-266724  JBrowse»
Reference genome
TAIR10.38
Type  
ag-circRNA
Identification method
find_circ; CIRI2
Parent gene
NA
Parent gene annotation
NA
Parent gene strand
NA
Alternative splicing
Splice junction sequence  
AGGAAAAGCCTACCGAGTAATCTGAGCAATTCTGTGATTTCTTCTCGTAGATCCAATTTTCCCA
ACATCGATTCTTTGGGCTTTCGCACAACTAGCACAGgatgtggtttcaccgacctctaagagcc
gacgagtggttgctctatgtggtagttttttctatccttgtttcttatgaacatttcagatcaa
atgtttgt
Support reads
2
Tissues
root
Exon boundary  
NA-NA
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTGGTAGTTTTTTCTATC
CTTGTTTCTTATGAACATTTCAGATCAAATGTTTGTTCAGAATAAATGAAAATGATTTTTGGTA
TAGAGTTGTTTTATAAACTTGTTTGCTGTAAGAGGTTCACCCACTTACAACACAAAGGATGCTG
CTTGCAGATTGTGAGTCCAACTGCGCATGAGACCCGTGGTTTTGTGACTGGTCAAATGTTCAAC
AGGAAAGGAGAGGTACTCTTTCTCTATTCTTTTGAACCCTATTATACATACATATCTGGAAATG
ATAAGTGATAAAAGAATTCCTTTTGGTATGTGTTTTTGAATATGAGAACAACAGCTGGTTGTAT
CATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAACCCTCCGGCACGTCGAAGCT
CTGAATGGCTCTCAACGTAAGTTAAATAAGATACATTATTACGAGTACAAGGCGACGAATAAAA
AGATCAAAAACCAATCTGGGTGGGTACTAAATAAAAGATTTTATTAGACAAACTCATAATGTCA
ATGTAGCACGCTGTATGTACATTGTTTGATTCCGGCCTTCTCACCTCTATCATCATCTATCTAT
AAATTCTCTTGTTTTTTTTTTTTGTTTTAAAATTCTTTCTCACAAGAACACCTTTAGATCGATT
CGTGGGCCAGAAAATTATGGGCCCAAGTATCAAATTAGTTTTCGTACGACCCATTTTGGATCCG
CGGGGGTATCTTTGATGGAACCGGTACACCTGCTTAACCGGCCGGTTTATAGTTTTGTATCCAT
TTGTGATTTGCGGGTTTCTGTTGCCACCTCCCCACTCTCCTCGCTTTTGTTGGTCTTGGAAAAA
CCCTGGGATTTTGGGTATCTCTGAGCACGAATTCTACATTCTCATGGCTTTCGAACACAGAAAT
GAAGACCTAAATTCCTTGGATTCGGAAGAAGATCTGGAGAAAATGGAGTCAGAGGTGGAGCAAA
TGTCGCGCAAGGTTTCCGAGTACAGGAAAAGCCTACCGAGTAATCTGAGCAATTCTGTGATTTC
TTCTCGTAGATCCAATTTTCCCAACATCGATTCTTTGGGCTTTCGCACAACTAGCACAG
Number of exons covered
NA
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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