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circRNA ID
AT1G01710_circ_g.6
Alias
ath_circ_000114, Ath_circ_FC0128
Organism
Arabidpsis thaliana
Position
chr1: 265335-265626  JBrowse»
Reference genome
TAIR10.38
Type  
ei-circRNA
Identification method
find_circ
Parent gene
Parent gene annotation
Acyl-CoA thioesterase II
Parent gene strand
+
Alternative splicing
Splice junction sequence  
TCTTCCAGATAAGTAACTATTACGAGTTACTATTCCTCATTTGGTTTGCAGGATGTGGTTTCAC
CGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTGgatgtgtcgttgcatttgcctcggattt
aatattttgtggtgttggtttgaaccctcaccggagaaaaggggtgaaatccgccgcacttagc
ctggacca
Support reads
12
Tissues
whole_plant
Exon boundary  
No-Yes
Splicing signals  
GT-CA
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GATGTGTCGTTGCATTTGCCTCGGATTTAATATTTTGTGGTGTTGGTTTGAACCCTCACCGGAG
AAAAGGGGTGAAATCCGCCGCACTTAGCCTGGACCATGCGTAGGTTTTTATTTTCTCTTGGTGA
TGTATGAGTTTTGTGTGTCTGGGTTAAATTTTTTAATTACATTGAGGCATTATTCCAGTAGGGA
TCTTCCAGATAAGTAACTATTACGAGTTACTATTCCTCATTTGGTTTGCAGGATGTGGTTTCAC
CGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
Number of exons covered
AT1G01710.1:2
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chen et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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