Detail information of BGIOSGA017011_circ_ig.1


General Information
CircRNA Name BGIOSGA017011_circ_ig.1
ID in PlantcircBase osi_circ_005692
Alias 4:28590291|28592728
Organism Oryza sativa ssp. indica
Position chr4: 28590291-28592728  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA017011_circ_ig.2 BGIOSGA017011_circ_ig.3 BGIOSGA014459_circ_igg.1 BGIOSGA017011_circ_ig.2 BGIOSGA014459_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATTATTTTCCCAGTATACTGAGATCGTGTTCCTTTTATGGAGGAGTTCAGAACACATCTGGC
AGATGATGGCGTGCTGTACAAAACAAGAGAACGATGaaaagaccctttctcgtgtcccaaaaga
catttctctaccaaaggttgtcttatgtttagctcataatggaaaagttgcttgggacataaaa
tggaaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAAGACCCTTTCTCGTGTCCCAAAAGACATTTCTCTACCAAAGGTTGTCTTATGTTTAGCTCA
TAATGGAAAAGTTGCTTGGGACATAAAATGGAAACCTCCTTCAGCAAATCAGTCAACATAAATC
ATGTTTGGGTTTTCTTGCAGTACTCTTGGGGAATGGCTCGCTTGAAGTGTGAGTGTACACTCTT
GTAGATCCTTATTTATCTCATTTAAATATCTATCACCCCCTCTTATCATCTTGTAATTCATTTT
TGTGCACAGATGGGAAGTTCCATCACCAAGCATGATTCAGAAAATATATTCCTCTTCTTCAAAG
GAGGGTACTGACCCTCGATTTTTAAAGCTGAAGCCTGTGTTTAGCTCTGCCAAAGTAAAGTGTG
GGAACAAACAAAGGTATTGGACCTGTAGACTTCTTTTTTTTTTTTGCTAGTAGTAGCTCAAACT
AGGTGGAAGATTTGGATATATTTCTTAATTCCTCAGCATGAACTTTAATTTTGAAGCCATTGCC
TCTTTATAATGGTAAACAGCATTCCCTTGACAGTTGATTGGTCACCCTCTCATGATATGATATT
GGCGGGATGTCACGATGGAACGGTACCTTCTCCTTACCCAGCAAAATTATTTTCTTAACTTAAA
TCCTGTGACCTTTGAGTCTTTCAAGTTGCTGTTCTGAAAGTTCTGTGATTGACTTTCTTATATT
CCAGGTTGCTTTATGGAAGTTCTCTGCAAACTTGTCATTTCAAGGTATTTAGATAGTTTTGCCA
ACGACGTCACTCTTATCAGTTATCATTTACACTTTGCCTGACAACATGTCTGACTGTAGAACTG
CTTTACTGGTTTAAAAGCAAGTTACTGGAGTTCCCAAATCTTCACATTTCTTATTCTGTTCTGT
TTGCAAACAAAACTAAATCATGCGTTCTGTTGATAAACAGGTTCAAAACCTTTTATGTGTGTAA
CTGCTGAATCTGCTCCCATCAGAACCGTGTCGTGGGCACCATCTGTGAGGTAGCCAGTTGTACC
GTTACTTCTGGTCTATTCCAAAAGATAATTTTTGAGTTTTGACTCTTGTCATTCTATCAGTAAG
GAAAACATGAATACCTTTGTCACTGCTGGAGAGGATGGTCTGAAATTCTGGGATTTAAGGTAGG
TGTTGGCCTTGTTGTGAACTGAAGCAATGTTTAAAACATCTTTCGAACTACTCTCTTATCCTGC
ATGAATTTCTAATATTATGTATGGGTCCTCAGAGGTCTGAACATTGAGGGTAGTCTCTCCCCCT
TCCTCTCAATTTGTGGCACCTCCCAATTTCTGAACCATTCATACTAGTAATATGCCCGTGCTAA
ACGCTACGGTGCAATTCTATTTAACTGTATCTTTAAAAAAATTTCATGTTACCAAAAAATATTT
TTATATGATATGTGCATTTGAACTTTAATTAAATTCATATAGTACATTAAATATATTTCATGTA
AGGTGCAGTACTATGATATTACGTGGGCACAGTAAAACTTTACAAGACTTAATTATATATAATA
TACCCTATGTACACAATATAAAAGGCAATATACGCATAAAAATATGTTAGAAAAGTATAGAGTT
ATTCCATTATTTGTTGCGGGCAGAAAAATATGTTAGAGAAGTATAGAGTTCTTCCATTATTTAA
ATAAAGCATTTGTTATGTATAGAATACACCTCATAGGTAAAGAATAACTATTCTAATGCTTTGC
ATTTGCGATACAGTGAAGAAAATCTCGTGCGCCGCTAGGAATGTTGCTTGCGCACTCATTTCCA
ACCGGACCGAATTCAGCCCAACCCAGCCAACTATTCACTTTAGAAGCGTGTGGTAGAGACTGAA
GAAAAAGAAAATAATTCTACTTTCGTTTATAATATTTTTTTCACTATCTTTTCAGATCACTACT
TGTAGATATATTTTTTATACTTATTAGGGTAATGCATTTAGATACATGTAGTTATATAAATTAT
CGTGCACATATATTTTTTAATGGAATGAAGTATGAGTTTTTTATTTCATTGTGACACATTTCAT
TTCTCAACGGTTATGATATAAAATATTTATTCATCTCATGTGCATCCTTTTTTTGAGTGTCATG
CGTATGGTTATATCTATGGACGGCATTATCATGCCTGCCCATTGTTGATATTTTATACAGTATA
TACATCCTGTATTTCTATTATACCGTGAAAGAAATAAATATATATTCATTTAAGTTGTATGGAT
GAACCATATAGAAGATATAGAAAAAAATTAATAAGCATTCATCCATCAATGATAGTTTAAGTTT
TGTCTATATTTTTCCTTTATATCTACTCGGCTTCAAATTATTTTCCCAGTATACTGAGATCGTG
TTCCTTTTATGGAGGAGTTCAGAACACATCTGGCAGATGATGGCGTGCTGTACAAAACAAGAGA
ACGATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021