Detail information of BGIOSGA014459_circ_g.1


General Information
CircRNA Name BGIOSGA014459_circ_g.1
ID in PlantcircBase osi_circ_005693
Alias 4:28597146|28598851
Organism Oryza sativa ssp. indica
Position chr4: 28597146-28598851  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014459
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA017011_circ_ig.1 BGIOSGA017011_circ_ig.2 BGIOSGA017011_circ_ig.3 BGIOSGA014459_circ_igg.1 BGIOSGA017011_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014459-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGGAAGGAGTTATATGTGTCGTTTGCAATACATCCAATCTGTTGGTGATATCCCGGAATGCAA
TACGCTCTTCAGTTTGTGGCTTCGTTGCGTCAACACctggcttgtaaacaggcgtaccaactca
gggggaaccaatggagtggctaccgttatcttcccttgcctgcagcagaatccagggggctcgt
actgaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGCTTGTAAACAGGCGTACCAACTCAGGGGGAACCAATGGAGTGGCTACCGTTATCTTCCCT
TGCCTGCAGCAGAATCCAGGGGGCTCGTACTGAAACCTAATCGCCCCACAGTACTTGCAATCAG
CCGTTTTTTTTAACACGTGATGTTTCTCTGGCAGGTTATGATAAACATAATCGTATGGATCTTC
AGCATCAACAGAATTAACACCCTTGATATCCACGCGATATGACTCGTAACCATTGTCTGAGAGA
GGGAAAATAAGCACAGAATTAAAATATGATCATATATACCTACTTGTCTTGAAAAGAGAAAAGT
ATTATTATACTTTATGATACCTTTATTTTGAAATTCCTCATCATCACTATCCACGACGTCACAT
GTCTGCGTCAGTTCGACATTACCTGATGGAAGGTGGATTAGTACTGATAATATCGTATAGTTGT
TGGGTTAATATATTGTGTAGTGAAATTTTTCATAAAACACCTCCAGCATTAATTAAAACAAATT
AAGAATGCTCACCTTCGTTGTCAAAATTGTTTAGTGCAGGCTCGAATAGTCTACTATCGAATTC
AATGTAATCGAAACTCGGAATGTCCTGATGAACATCTTGGACAGGTATACTTTCGTCTGCTGTA
ACTCCATCTGCTTAATCAATATTTCATGAAATAATAAATCGAGAAGAATATGAAATATTGATTT
ATGCATTGAATTTTATGGAGGGAGTTTACCTAGCATGGGTGAGTGTTGGTCACGTTCAATGCTC
ACTGCTTTCCTCTTCCTACATTGTCTTTGGTAGGTATCATTTCTGTGAAACCAATCCATCGGAT
CATCTGGATCAACATCTTCCTTGTATAATACGCTTGTAGCTTGCAAAATGGTAGAAGATGTCGT
TCCATATGGCAACACTAAATGAAAAAATAGTGATTAAAACAAAAAGTTGATTCTGACAGTAAGT
TATACCATTATGATTGGTTAATTCAGAATTTGATCCGCTAACAATGCTTGACTCGGCCTTCTTC
CTCGCACGGTATTCACGCTGCTTTCTGTTCCTTTCCTCATTTGCTGGTTGTACTGCTGTTAAAG
AGATCACGCTCCCAGGATCCCCATCTTCGTTGTATAATACGCTTGTTGCTTGCAAAACGATATA
AGATGTCGTTGAATATGGTGATACAAAATGAATAAAAATGTGATCGGTTGATTCGTCACGGGCA
TAAATTTTACCATTATGATCGGTTGATTGGGAATTTGATCCCCTAACAATGTCTGACTCGGCCT
TCTTCCTCGCACGGTATTCGCGATGCTTTCTGTTCCTTTCCTCATTTGCTGGTTGTACTGGTGT
TAAAGAGGTCACACTACTATCAAGATTAGTTGACCCAACCTTCTTCTTTTGGCGATATTCACGT
TGCTTACGGTTCCTTTCCTCTCTGGCATCATTGGTAGCTTCAGCTAGCTGGGCATTGACAACTT
CAAATTCCTTAGAAAGAGAAGCAGTAGTTGGTTGCCGCAGTGTTCCAGAACACGGGGTATTTGC
TGCAGCCTTTTTCCTTGCACGGTATTCACGTTGGCTTCGGTTATGTGCTTCCCGCTTACGTAAT
ACCTCATCGGAAGGAGTTATATGTGTCGTTTGCAATACATCCAATCTGTTGGTGATATCCCGGA
ATGCAATACGCTCTTCAGTTTGTGGCTTCGTTGCGTCAACAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021