Detail information of Os02g0738900_circ_g.4


General Information
CircRNA Name Os02g0738900_circ_g.4
ID in PlantcircBase osa_circ_016454
Alias Os_ciR2895
Organism Oryza sativa
Position chr2: 30863459-30866859  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os02g0738900
Parent gene annotation Dynamin-related protein, Secondary cell wall cellulose biosynthe
sis (Os02t0738900-01)
Parent gene strand -
Alternative splicing Os02g0738900_circ_g.5 Os02g0738900_circ_g.6 Os02g0738900_circ_g.7 Os02g0738900_circ_g.8 Os02g0738900_circ_g.9 Os02g0738900_circ_g.10 Os02g0738900_circ_g.11 Os02g0738900_circ_g.12 Os02g0738900_circ_g.13 Os02g0738900_circ_g.14 Os02g0738900_circ_g.15 Os02g0738900_circ_g.16
Support reads 4/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0738900-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAACAAAGTGGTACCTCGCGTTTGAATGGAGGATATCTTCCAAGTCCTGGTGTAGCATTTGC
AGAAGCATTTACTATGTCCAATAATACACGGTGTACcagctccagaactatcattggtatacga
tgcaacagaagctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgat
tgtttttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTCCAGAACTATCATTGGTATACGATGCAACAGAAGCTCTATTGTCATGGATACTAAGCTG
ACGAGTAAGCTTTGACAATAGAGATGATTGTTTTTGGTACTTCTCCCGTCTACGTTTAGCATTG
TGGTCCTCTTGGAGAAGTTCTTCAATCTTTGCATTGGTTTGAGCACTAATGATGAGAGTTGTAA
CAAGATTAGCAGCAAGTTACAAAAGGAACAGAATGACTATGAAATAAACACTTAACATGTATGT
GGAGCGTGTAACAGTTTTATTTTTTCAGGTGTGCTTTACTTAATGGAATTTCTACCATTTAGTG
CACCATATGTCATGTATCTACTTGTGATATGCCATGTGAAGGAATGTCATGAATAGAAATAAAA
ATAATAAATAAAATATGAGTTATGCGAACAATGTTCAGTAGCGCCTGCAGACATTGCAGTAAGT
CCTTTAAGTTGAAAAAGGAAAACTAAGGGTATATCCATTTAGTGAAATATCTGCAGGTGCTCAC
CAAAGTCTTTGTGTTGGCAGTTTTCACTTGTTAACAACTGATCCAAGTGTTAACAGTGGCGTGT
TAACAAGAGAAAACTGAGTTGAAAAGGAAAAAAAAAAAGACAATATCTATACTTAAGGTCAATG
CAGTTCCATCTAGGGGTATGTCCATTTAGTGGAGAAAAAGAAAGAAGCGAAACCTTATGCAATG
CACAAATACAAAGAAAGAATACGCATCAAACCTTATTTTGCTGTAGAGCTGATTTAGCATATCT
TCCTTTGCTTTCTCCACTTGGCAAAGTACGATTGCCTGATCATGAAAAAGACAATAATAACAAT
TGCAACTATGACCATGTTAAATTGAGTTTAAAAAATAGTATGACTGTTGAAACAATTGTGAGGT
TCAAATGTAAACCTTTGGAACATTTGCTGCCAAACTGTTCAAAACAGCCTCTACATAACCACGA
ACTTCTTGAGACATCCACCGAAGTTCTTCTTCAGGATCAGCAGGCTTCCGGGCCATCGTATCCT
TAAGGGAGAGTAATTGTGTCACAGGCAATTCAAAATTTGTGTTTGACACATTCAAAAAATAATC
ATGGCCGTGGGAAAGTGGAACAGGTTGATATGAGTGTTCAGTTAAGATAGTTGCACAAAACAAG
TGGCTTTAATTTCTTAGAGAAATTCAAATGATAAACATGGTCACTGGTAAAGTAGAAAACTTGC
CACAAGCATCCACTGAAGAGAGGGTAAAAATAGCTTAGGCAATAACTCAGAATTGTAGATGTTA
AAAGCTTTACAATGACAATAGCATAAAAAATGTCAAATAAGGAACATACAAGGGACCCATCAGA
ATGGCTTTGCCTCATGGAACCACCCTCAGGAGTATTTAAACCCTTCACAGAACCCCCTTTGCTT
TGAATGACACCTCTTATCTTCTTCATCCATTCAACCTTGTCAGCAATAGTCTCGGCCTTCAGTA
TAACAGCACTATGAGCTGCAACATGAAATTCACACTTTAAGCAACATAATTAGCATTTAAAACC
TCAGCATATAACGTTTAGAGACACTAACATTTCAGCACAGTTTTGTAGGCAACTCTGTTAGTAA
TCTTAAATACAAGACTTGGGCCTTTCTCTGCCCCATTGGCCTTCTTTGAATCCTTCAAACTCTT
GGAAAGCTCTTCCTCTTCTATCTCTTCCAGATTACATTCCTGACTCACGCAGCAAATTGTGTTA
TTAAGTTCATATCTCATCTCTCATAGTTGTGCACACAACTTTTTTAGTTTGAATCATCGAATGT
GAACTGGAACCACAAGGACTGTAAAATTACAAGTCTAAGGTGTAAACTAAAGTATCGTAGATCA
CTGTTGAGCATGAACACAGAAGTATAAAAAGTTAAGTGCACACCTCCAGGACAATAACACCTCG
AAAATGTCTCTCCTCTTGTTTCTTGGTGTACCCAAGCTGGACATGAAAAAAAAAACAGTAAATG
ACACCAAATTCTTAACTAAATAAAGGACATTTGAAAATCGGCAGCAAATGACAAGATTATCATA
AGTTATTATTCAGAAAAATCAAATATGGGGAACACCAGTACATCAGTGTACGAGATATATTAAC
CTTTCCACTCTTCTCATTTAGGACAAACCATCTTTTGCTCCATTCATTATTTTTTGCACTTTTC
TTCAAAAGGTAGCCTGAGTAGAAAAGAAGAAATCATCTTATATGCAAAAAAGCCAAACCAGGAT
ACAGAATTAACCAAAACCATCTGCAGTTACTTGTAACTACAAATGAAAGATTACACTAGCTGTG
AAGAGCCAGAGTAAATAAAAAAAAACTACAGGAATGATAACCTATGGTGCATCAGCGCATCATT
ATACCTGCAGTTATTTCACCACCAGGCCCAGCAACCTGCAAATTTGGTCCCTCTTTTGCATCTT
TATCTTTGTCTTGCTGACTGAATTTTTCTTTCAACGATTTCAAGGCACCACCAGATTGCTCAGA
TCCTGTGCCTGAGCCCTAATACAGAAGGCAACCAATGTTCAGGGCCAAACAAACGCAAGAAAAA
GGAATCTTGCAGTCATTACTTTTAGCATGACCTTTCAGTAAGCACATTTGTGCAAGGTGCAAGA
GGCAGAAATCATACCTTGTTGGACTGTTCTGCATCTTGGGCTTTCTTAGATGACCTGTTTTTCA
CCTCATCCTCACGACGTTGCCTTTCCATTCTGCAATGTCATATCAAACCAAATATAAGGATTGA
ACAATGCTATTATAAATCATGAAAACATCGTAAAGGTCTTTCAGCTCATAGACAGACACTAGTA
TGGAAACATTATCCACTTCAACTAAGGGATGAAACTATATTTCTCTAACAAAGAAGTTGTAATG
AAGTGGTATACTTCGTGGGCACATCACTCTGTACAGAAAATATGCCGGCCTTTTTTCCATTTGG
ATTTAGGCAGTTGATGCTATTTCTATAAGACTACAAGTCAATGTTATTCTTCCCTATCAGCTTT
TGTGGTGGAAATTATTTACTGAAGTTACATTAGAGCAGATTGAAACCAAACCAACTGTAAAGTT
ATTCAATTAAGAGCCTGACATACCTTCTTTGTACTAAACGGATGAAGTGTTGTGGTGGGACAAA
GGCACGCTCCATATCAACAAGTGCAACTACCATCTTTTTTGCATCACTTTTGAAGACATCCAAT
GCATTGGTTGCAATTTCAACGACCTTCAGAAAAGAGATGATGGGATGTTGTGCTCAGGAAGCAG
GTGAAAGGGAAGTAGAATGCATTGTAAGTTGGTGAAATAGAACAAAGTGGTACCTCGCGTTTGA
ATGGAGGATATCTTCCAAGTCCTGGTGTAGCATTTGCAGAAGCATTTACTATGTCCAATAATAC
ACGGTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.120867566
Functional Information
Coding potential Y
Potential coding position 30866573-30863534(+)
30866629-30866676(-)
30863622-30866676(-)
Potential amino acid sequence MKCCGGTKARSISTSATTIFFASLLKTSNALVAISTTSRLNGGYLPSPGVAFAEAFTMSNNTRC
TSSRTIIGIRCNRSSIVMDTKLTSKL*(+)
MVVALVDMERAFVPPQHFIRLVQRRMERQRREDEVKNRSSKKAQDAEQSNKGSGTGSEQSGGAL
KSLKEKFSQQDKDKDAKEGPNLQVAGPGGEITAGYLLKKSAKNNEWSKRWFVLNEKSGKLGYTK
KQEERHFRGVIVLEECNLEEIEEEELSKSLKDSKKANGAEKGPSLVFKITNRVAYKTVLKSHSA
VILKAETIADKVEWMKKIRGVIQSKGGSVKGLNTPEGGSMRQSHSDGSLDTMARKPADPEEELR
WMSQEVRGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSKISAQTNAKIEELLQEDHNAK
RRREKYQKQSSLLSKLTRQLSIHDNRASVASYTNDSSGAGTPCIIGHSKCFCKCYTRTWKISSI
QTRGR*(-)
MQRLKNFSKRTTMLNVDGRSTKNNHLYCQSLLVSLVSMTIELLLHRIPMIVLELVHRVLLDIVN
ASANATPGLGRYPPFKREVVEIATNALDVFKSDAKKMVVALVDMERAFVPPQHFIRLVQRRMER
QRREDEVKNRSSKKAQDAEQSNKGSGTGSEQSGGALKSLKEKFSQQDKDKDAKEGPNLQVAGPG
GEITAGYLLKKSAKNNEWSKRWFVLNEKSGKLGYTKKQEERHFRGVIVLEECNLEEIEEEELSK
SLKDSKKANGAEKGPSLVFKITNRVAYKTVLKSHSAVILKAETIADKVEWMKKIRGVIQSKGGS
VKGLNTPEGGSMRQSHSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAIVLC
QVEKAKEDMLNQLYSKISAQTNAKIEELLQEDHNAKRRREKYQKQSSLLSKLTRQLSIHDNRAS
VASYTNDSSGAGTPCIIGHSKCFCKCYTRTWKISSIQTRGR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017