Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os02g0738900_circ_g.4 |
| ID in PlantcircBase | osa_circ_016454 |
| Alias | Os_ciR2895 |
| Organism | Oryza sativa |
| Position | chr2: 30863459-30866859 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, find_circ |
| Parent gene | Os02g0738900 |
| Parent gene annotation |
Dynamin-related protein, Secondary cell wall cellulose biosynthe sis (Os02t0738900-01) |
| Parent gene strand | - |
| Alternative splicing | Os02g0738900_circ_g.5 Os02g0738900_circ_g.6 Os02g0738900_circ_g.7 Os02g0738900_circ_g.8 Os02g0738900_circ_g.9 Os02g0738900_circ_g.10 Os02g0738900_circ_g.11 Os02g0738900_circ_g.12 Os02g0738900_circ_g.13 Os02g0738900_circ_g.14 Os02g0738900_circ_g.15 Os02g0738900_circ_g.16 |
| Support reads | 4/2 |
| Tissues | root/root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os02t0738900-01:11 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.120867566 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
30866573-30863534(+) 30866629-30866676(-) 30863622-30866676(-) |
| Potential amino acid sequence |
MKCCGGTKARSISTSATTIFFASLLKTSNALVAISTTSRLNGGYLPSPGVAFAEAFTMSNNTRC TSSRTIIGIRCNRSSIVMDTKLTSKL*(+) MVVALVDMERAFVPPQHFIRLVQRRMERQRREDEVKNRSSKKAQDAEQSNKGSGTGSEQSGGAL KSLKEKFSQQDKDKDAKEGPNLQVAGPGGEITAGYLLKKSAKNNEWSKRWFVLNEKSGKLGYTK KQEERHFRGVIVLEECNLEEIEEEELSKSLKDSKKANGAEKGPSLVFKITNRVAYKTVLKSHSA VILKAETIADKVEWMKKIRGVIQSKGGSVKGLNTPEGGSMRQSHSDGSLDTMARKPADPEEELR WMSQEVRGYVEAVLNSLAANVPKAIVLCQVEKAKEDMLNQLYSKISAQTNAKIEELLQEDHNAK RRREKYQKQSSLLSKLTRQLSIHDNRASVASYTNDSSGAGTPCIIGHSKCFCKCYTRTWKISSI QTRGR*(-) MQRLKNFSKRTTMLNVDGRSTKNNHLYCQSLLVSLVSMTIELLLHRIPMIVLELVHRVLLDIVN ASANATPGLGRYPPFKREVVEIATNALDVFKSDAKKMVVALVDMERAFVPPQHFIRLVQRRMER QRREDEVKNRSSKKAQDAEQSNKGSGTGSEQSGGALKSLKEKFSQQDKDKDAKEGPNLQVAGPG GEITAGYLLKKSAKNNEWSKRWFVLNEKSGKLGYTKKQEERHFRGVIVLEECNLEEIEEEELSK SLKDSKKANGAEKGPSLVFKITNRVAYKTVLKSHSAVILKAETIADKVEWMKKIRGVIQSKGGS VKGLNTPEGGSMRQSHSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAIVLC QVEKAKEDMLNQLYSKISAQTNAKIEELLQEDHNAKRRREKYQKQSSLLSKLTRQLSIHDNRAS VASYTNDSSGAGTPCIIGHSKCFCKCYTRTWKISSIQTRGR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017 |