Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037982_circ_g.10 |
ID in PlantcircBase | zma_circ_009095 |
Alias | zma_circ_0002363 |
Organism | Zea mays |
Position | chr6: 144248303-144252174 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037982 |
Parent gene annotation |
AMP deaminase |
Parent gene strand | - |
Alternative splicing | Zm00001d037982_circ_g.6 Zm00001d037982_circ_g.7 Zm00001d037982_circ_g.8 Zm00001d037982_circ_g.9 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037982_T004:2 Zm00001d037982_T006:3 Zm00001d037982_T003:2 Zm00001d037982_T007:2 Zm00001d037982_T005:2 Zm00001d037982_T008:2 Zm00001d037982_T001:2 Zm00001d037982_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.097756782 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
144252027-144248305(-) |
Potential amino acid sequence |
MDTSGNLEGEHKGNAIVENGAAKPLAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVK LLTTPKGSKQLARSGSNRRVEIIRPKSPKSPAASASEDGSDEDDSIQSSGKLDNGYMDTSGNLE GEHKGNAIVENGAAKPLAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVKLLTTPKGS KQLARSGSNRRVEIIRPKSPKSPAASASEDGSDEDDSIQSSGKLDNGYMDTSGNLEGEHKGNAI VENGAAKPLAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVKLLTTPKGSKQLARSGS NRRVEIIRPKSPKSPAASASEDGSDEDDSIQSSGKLDNGYMDTSGNLEGEHKGNAIVENGAAKP LAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVKLLTTPK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |