Detail information of Zm00001d037982_circ_g.10


General Information
CircRNA Name Zm00001d037982_circ_g.10
ID in PlantcircBase zma_circ_009095
Alias zma_circ_0002363
Organism Zea mays
Position chr6: 144248303-144252174  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d037982
Parent gene annotation AMP deaminase
Parent gene strand -
Alternative splicing Zm00001d037982_circ_g.6 Zm00001d037982_circ_g.7 Zm00001d037982_circ_g.8 Zm00001d037982_circ_g.9
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d037982_T004:2
Zm00001d037982_T006:3
Zm00001d037982_T003:2
Zm00001d037982_T007:2
Zm00001d037982_T005:2
Zm00001d037982_T008:2
Zm00001d037982_T001:2
Zm00001d037982_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCATCTTCACTTGCACTGGCAGCAGGAGACTTGGGTGACTTAGGTCTAATTATTTCAACCC
GTCTATTTGAACCTGACCGGGCAAGTTGTTTACTGCcctttggagtagttagcagcttgacaaa
tgattcttgctgaggttcttttcgtagaatatctgcagcaactgggtcaggttgaactgcatga
agattatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGGAGTAGTTAGCAGCTTGACAAATGATTCTTGCTGAGGTTCTTTTCGTAGAATATCTGC
AGCAACTGGGTCAGGTTGAACTGCATGAAGATTATTGGATTTACTGCGTGACCGTATCAAGTTT
GCTGCAGCTAATGGCTTGGCAGCCCCATTTTCCACAATTGCATTTCCTTTGTGTTCTCCTTCCT
GTTCAAAATGTATTAGAAAATCCTGAGAGGTTTTTCAGCCACTTTCTCTACCAAATAGGAGAAG
AACAAAACATTCATATAGAATTGGTCCATGCATCATACAGCAACAAAACTAGTGTAATATAAAA
CACAAATGCAGTATTCGAGTTCATCTTTGGCTGTGTTTTTAATGGCTCTACTCCAAACATTAAA
ATGGTGTTGCGAGCTGTCACTTATGAGTGCATCCTTTGGTGCTCGGCTGGAGGTAGTTCTGATC
ATGTTGCTTTCAGTCTTTATTTTCAGTTTATGTTCTGCTCCCTCCATTTCAAATTGTAAGTTGT
TCTGGCTTTTCTAAATTCATAAATTTTACTATGTGTCTTGATTCTTCAAAAAAACTATGTGTCT
TGACATAATATGTATCTAGTTGTGTAACAAAAAACTATGTATCTAGAAAAGCTGGAACGACTTA
CAATTTGAAATGGAGAGAAGGGATCTAGAATGTTGTGGGTGTTTGAGTGTGAGTGTTGTTGGGA
ATTTCTTCCCCAGTTCCCTGTGTTACCTTTCTTCTGAATAAGATGGTACCAGCTCTCTGCGTGT
TAGGGAAAAGAAAAACAGTGGCTGATGAGTGTAGAGCATGTTTGGTTCTCCGACACAACAAAAT
TGAGGCTGCCACACCTGCTGACATAGCTGTTTGGATTGTAAATAAAGTTAGGCACACAACACCT
TTTTGCATTGATCTACAACAGCAAAACTCGCCACAGGGGTGGCGGCTGTTTTTGGCACCGCAAG
TGTGGCGACGCCACAACGTGCATGGCGAGTTCCGGCTGGGAACCAAACAAACCCGTAGTTTTTG
GTGCATGGCAGATGCCTCTAATCTTCAGGAGCTTCTCGTTATCTCGCCCTCTCAGACCTCTAGG
CTCTGTTTGGTAGGCTGCTTCCCAATTGGTCGTATTTTGCTCTAGTATGGGGATGAGTTTGTTG
TTCTAGCTGGTGAGTGTGCGTTGCGTTTCTGGGTGGGGATATTTTACCCTCGCCTCTTTTTCTC
TCTCAAACGAAATTGCACACAACATTTATTTGAGAAAAAAGCAGATCCAATGCCGGAGGCTCCC
ACATGAGTGGGGTACGAGAAAGGGATAAACCGAGGCAAGCCTTTCTCCCACAAATGCAGAGAGG
CTGCTTCAAACCCATGAGTTGGTGCCTCAGTGAGACAGCTCTCACCACTGCATCAGGTTTGTCC
TTCTCATTCGAGAAAAAAATAAAGATTTTTTCAATGATCTTCTGAACTTCACCCTATTAGAAGT
CGTAGAGGGGCAGCTGAAGCAGTAGGAGAGTTAAGAGATAGGATGACAGTGCATTCCTTTTCAA
CGTCAAGGTAGTCTCAATCATTTCATTAAATCCCTATACCATTGTCTACTAAAATGTGATGCAG
ATCATTTGATGTTGACCCTTTGCATCATACAACAGTCATAACATAGCAACTTCTTCATGTGGTT
AGTGGCACACAATAGGCGCTGAACAGCAGACCGTCTTTCTAAATAAAGGTCTGCCCCACCCTGA
ATGCTGCCCGCTTTGTGATCAAGCTGAGGAAACAATTGACCATCTACTGGTCTCATGTGTCTTC
CGTCGGCAAGTGTGGTAAACATTCTATATAAGGTTGGCCTGCAGGACCTCTCCCCCCAGCTCCT
TTGATGCATGGTGGGCAAGCACAAATTCTGGTGTTGATGACCAGACTAAAAAAGGTCTCAGTAA
CATCATCATTCTGGGAACTTGGTCCAGTTGGAATCACCACAATCGTTGTGTTTGATGGGATTCA
ACCGAGCCTAAATAGAGTTCTAGTCATAGTTGTTAAGGCGGTAAGGCGACTGACCTCCTTTTAC
CTTTTAAGCGGTAAAGCATAAGACAATGTGACACATTAAATATATTTAAAAATATAAAAATATT
GCTATTTGAGAAAGTATTTAGCACAAAAATAATAATAATAAAGAAGAGAAAAAGATGATAAAAA
TAAGAAAAAGACTAGCCCAGCCAGCCCAACTATCCCCTTAAAATTAGGTTAAGCCCACTTCCTC
TCTCTCACCGCTCTCTCTCTCTCTCTACTCGCTTCTCCCTCTATCCTGTGCCGGCACCGCCGCG
CCACTACAGCCGCTGGAGCCACCGCCGCGCTGCCAGCCGCGAGCAACCTCTCTCCCACTCGCCT
TAGGTGCACGAGTAAGGCGAGCAGGACGCCTTACGTCGCTGGGGCGCCTTACCGCCTAGGCGAC
GCCTTAACAACTATGGTTCTAGTTCGGTAAAAGATGAGTTTCACCTGTGGAGTTTGGTCGGAGC
TCAGGGAATATCCAATCTCCTTGCTCGAGAGTCAGCCAATGTGTGAATTCCTCTCTAGTGGTCT
TGGGTCAAGTTTGACAAGTGAGAGAGAGATACAACATTTGATGTAAAAGGGTGTGTATGTGTGT
GGCTGTATGGGGTTTCCAAAGTCAATCCTTTACTCTCATTAATATAATGATACACAACTCTCGT
GCATGTTCGAGAAAAAAAATATATAACAAGCTTTTTTTTTCTCGAACGCGCAAGAGACATGCGC
ATCTTTTCATTAAGAAGGAAGAGAAAAAGGATCCAAAATGGATCAGTACAGGAAGACCCCCATT
ACGGTGGTCGAAAACAAAGAAACAAAAATACATCTATAAATAAAAGGAAGCAGAAACTACTTTG
ACCTAAAGACCTGGGATTGGGGCTGTTAAGAGATCTAAGTTTGTGGCCCCTCCTAACACCCACA
GGTCCCTTTCCTCCTCGGTTCTCTTGATGGCTTCATAACAAGCTTTATTTCATGTAGACTTCAC
CCAAAACTACTCCGACCCTTTCAAATGAACCACACAAAAAACTTCATCATTATTTGATCTCAGG
AAATGTCTCAGGGGCAGATTGGTGCATGCTGCCATGTTGAGGATACCTTTAGTTTCAGCCCTAG
CACCTAGAAACCATCTCCATTGCATCCAGTAAAGGAGATTGTCGCCATCAATTTTCAATGCAAA
GACAAGTTGTTTAAACGGAATGTTGGAGTGTTGTAATGTCATGAATCATGTCTACTGGTTCACA
GGAATCCACCTTGGTTCACTTGTAGCCCAAGATAATTTTTCTACAGATTTGTAATCATTAAATG
AAAGAAAAACAGTAGAATATTCACCCTGTCCCCAGAGGTCTATTCCCAGAAACTTTTAATTACC
TATAATTTGGAACAAGTAATCATACATATCTATCGAGTATAAGGAATGGTGGCTAATATTTTTA
AAAAACCAGATAAATGATGGAACAGTTCATGCTCAACCATCCCTGAAAACTTTTCGCTACAAAG
GCACTCAAAGTCTTAAACCATGGCCATTATCTCTACCATTTCAAACAAATGCATACCTTCAAGT
GGTTCCTTGCATGCAAACTCACACCAAGGTCTACTTTGACATACAAAAATATAGCATATGTGAG
GCAGGCAGTGAGGGAGGGGAGTAGAAGACTAACAAGTGGATGATGGGAACTTACCAGGTTTCCA
CTTGTGTCCATGTAGCCATTGTCAAGTTTACCACTACTTTGTATAGAATCATCCTCATCTGATC
CATCTTCACTTGCACTGGCAGCAGGAGACTTGGGTGACTTAGGTCTAATTATTTCAACCCGTCT
ATTTGAACCTGACCGGGCAAGTTGTTTACTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.097756782
Functional Information
Coding potential Y
Potential coding position 144252027-144248305(-)
Potential amino acid sequence MDTSGNLEGEHKGNAIVENGAAKPLAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVK
LLTTPKGSKQLARSGSNRRVEIIRPKSPKSPAASASEDGSDEDDSIQSSGKLDNGYMDTSGNLE
GEHKGNAIVENGAAKPLAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVKLLTTPKGS
KQLARSGSNRRVEIIRPKSPKSPAASASEDGSDEDDSIQSSGKLDNGYMDTSGNLEGEHKGNAI
VENGAAKPLAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVKLLTTPKGSKQLARSGS
NRRVEIIRPKSPKSPAASASEDGSDEDDSIQSSGKLDNGYMDTSGNLEGEHKGNAIVENGAAKP
LAAANLIRSRSKSNNLHAVQPDPVAADILRKEPQQESFVKLLTTPK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b