Detail information of BGIOSGA023886_circ_g.3


General Information
CircRNA Name BGIOSGA023886_circ_g.3
ID in PlantcircBase osi_circ_017369
Alias Chr07:26042771_26043119(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 23828116-23828464  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA023886
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023886_circ_g.2 BGIOSGA023886_circ_g.4 BGIOSGA023886_circ_g.5 BGIOSGA023886_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAAAAGTAACGGGGATGCCAAGAAGCTGCCTGACAACCATATAAAAACCAGGATCATGCAAG
GCATCAGTGCAATTAATGCATGTACTAATCGCGCACataattattctgtgtcagattttgcaat
tggcagaaagtttctttaaaacacatacatcgatcagcggtgcatacagaactcttgggaatac
atcatggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATAATTATTCTGTGTCAGATTTTGCAATTGGCAGAAAGTTTCTTTAAAACACATACATCGATCA
GCGGTGCATACAGAACTCTTGGGAATACATCATGGGTCATGCCCATGTGTCATCTAAAGTTCTA
AACCATATATACTAAAGATTTAAGAACGAATTCACAGATCATCCCCCAAAATGTGACTGCTATG
AAATTGCATAGCAGGAAGGACAATCCTAGCTCCTATACCTCTGCAGGTACAATCATAGCTAAAA
GTAACGGGGATGCCAAGAAGCTGCCTGACAACCATATAAAAACCAGGATCATGCAAGGCATCAG
TGCAATTAATGCATGTACTAATCGCGCAC
Conservation Information
Conserved circRNAs osa_circ_034834
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021