Detail information of BGIOSGA023886_circ_g.2


General Information
CircRNA Name BGIOSGA023886_circ_g.2
ID in PlantcircBase osi_circ_017368
Alias Chr07:26041506_26043457(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 23826851-23828802  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA023886
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023886_circ_g.3 BGIOSGA023886_circ_g.4 BGIOSGA023886_circ_g.5 BGIOSGA023886_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA023886-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCCAGCTTCATTGAACACACCAGCTATGTCATAATGAGTAGCAAAATGATTGTCTGAGTTAG
CTGTTGTAGTCTGCATTTCACCATGATATCCTGCACccttccacatgatgcagcccagtgaagc
gcagtccatcctcgagcatccctgaagttcacctttacaccagccgtaattattggccttacag
cccaatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCACATGATGCAGCCCAGTGAAGCGCAGTCCATCCTCGAGCATCCCTGAAGTTCACCTTT
ACACCAGCCGTAATTATTGGCCTTACAGCCCAATCATACCCAAGTGCAGCTACCAAATGAATCA
CACCTTGTCCTTCCTTGCCAAGCACATTGGGACCTTTGTCTTCATCATGTACCTTATGAACAAG
CCAACAATATAGTTTCTCTTTCACCAATTTCTCAATATTCTGATCCCGTGCAGTGGAAACTTCC
TTCTCATCCAATGGAACTGCCTGGTTTAAACATTTATCATCAAGCATTAAGGAACTAATAGTGT
TGATTATTTCAGACTTCTCTTTTCCATCACTCATAACATACTTCTCATAGTCATCTGGTCCCAA
CGAAAGTAACTTCTCAAGACGAATATGTAAATGCATTTCATTTATGCCTGTTGTCTGGGGATCT
GAAGTATCCATTTGTCGAGCATCAGAATCACGGAACTCAAACTCTCGCACTTCACTACAAGCCA
CCCTATTGGAGCATGTCACATAAAATGGGACTCGTCCAGATAAATGTACTGGTGTGTAGCAGCG
CAGAGAGCCATGTGCTAAAACCTCTGCAGGTACTTCAACGTCCCCAAACATACATGACCACTTG
CAATTCTCCACATGTTCTTTATTTGCCAAGAATGTACCAGTAATTAGGACCTGCACCAGGTGGT
TGCCAAAAGATAGATCAACATAAAGCTCAACATAATAACAATCTTGGCAAAAGATAGATTGACA
TAAAGGTCAACATAAAGCCCTGGCAGTAATCAAATTCAAAAAACATAAAGGTCAACATAATAAT
AATCTTGGGCAACTTATGTTGTACCTATGGTAAAAATAAATAAAATGACAGCAGAAGAAATATA
AAGAATAGTGCAAACCTTATTCCTAGAGCCAGTGCATGCGTAGCTTGGAGAAACATCAATAATG
CTGAAGAGCTGGTCTTGGGAAAGTGAAGGGCTGACTGCGAATGCATCTAACTGTTCATTTATAG
GTATGCTAGTGCCATCAGCGACGTTCACTGTTTCAGTACTACTCCAGAAGGCATCAGAACTGGA
CTTGATATCCAAATCAGCTACTTCTGGAAGTTCACTACTCATCCATCTCGAGAAGCTGTCAAAT
TTCTTCAAACCATCGGGTTCGATCTTAAAGAGATCTAGTGATGACTGCTTTAAAAGTGGATACC
GGATCCCATCTGTATAGCTATTATTCTCTGCCTGAAAAATTAGGGCAATATAATTATTCTGTGT
CAGATTTTGCAATTGGCAGAAAGTTTCTTTAAAACACATACATCGATCAGCGGTGCATACAGAA
CTCTTGGGAATACATCATGGGTCATGCCCATGTGTCATCTAAAGTTCTAAACCATATATACTAA
AGATTTAAGAACGAATTCACAGATCATCCCCCAAAATGTGACTGCTATGAAATTGCATAGCAGG
AAGGACAATCCTAGCTCCTATACCTCTGCAGGTACAATCATAGCTAAAAGTAACGGGGATGCCA
AGAAGCTGCCTGACAACCATATAAAAACCAGGATCATGCAAGGCATCAGTGCAATTAATGCATG
TACTAATCGCGCACCTGTGATGACATTATGCCTGCAGCACTCAGTGCATCAGCTTCTTTCTGAG
TGAGGTTGTTGGTGTAGAGTGCCTCAGACATGAACGTTTCCAACCGTGAGTTATCATCCAGATT
GTTGGACTCCATGGTGGCATTAGAAGAATAGAGTGCTGGCTCCATAAACTCAGCTGAGCATTCA
GGATAGGGCTCAGCAAAACGCACTGAATCATGTAGAGTTTTGGAAACGCCCCTTAATCCAGCTC
CAGCTTCATTGAACACACCAGCTATGTCATAATGAGTAGCAAAATGATTGTCTGAGTTAGCTGT
TGTAGTCTGCATTTCACCATGATATCCTGCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021