Detail information of Os07g0141400_circ_g.14


General Information
CircRNA Name Os07g0141400_circ_g.14
ID in PlantcircBase osa_circ_032742
Alias Os07circ01294
Organism Oryza sativa
Position chr7: 2137852-2137974  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os07g0141400
Parent gene annotation Similar to 23 kDa polypeptide of photosystem II. (Os07t0141400-0
1);Similar to 23 kDa polypeptide of photosystem II. (Os07t014140
0-02)
Parent gene strand -
Alternative splicing Os07g0141400_circ_g.1 Os07g0141400_circ_g.2 Os07g0141400_circ_g.3 Os07g0141400_circ_g.4 Os07g0141400_circ_g.5 Os07g0141400_circ_g.6 Os07g0141400_circ_g.7 Os07g0141400_circ_g.8 Os07g0141400_circ_g.9 Os07g0141400_circ_g.10 Os07g0141400_circ_g.11 Os07g0141400_circ_g.12 Os07g0141400_circ_g.13 Os07g0141400_circ_g.15
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os07t0141400-02:1
Os07t0141400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTGGGGTTCCACTTGGACGGGATCAGCAGCTTGAACCCCTCGCCGCTGTAGGCGATGAAgtt
gctgttggcgtcgaagttgtcctcgtagcggaggacctgtccggggaactcgcgctcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCTGTTGGCGTCGAAGTTGTCCTCGTAGCGGAGGACCTGTCCGGGGAACTCGCGCTCCTTG
CTGGGGTTCCACTTGGACGGGATCAGCAGCTTGAACCCCTCGCCGCTGTAGGCGATGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.511613098
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015