Detail information of AT2G02800_circ_g.3


General Information
CircRNA Name AT2G02800_circ_g.3
ID in PlantcircBase ath_circ_012612
Alias AT2G02800_C1, AT2G02800_C1
Organism Arabidpsis thaliana
Position chr2: 798383-798720  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRI2
Parent gene AT2G02800
Parent gene annotation Probable serine/threonine-protein kinase PBL3
Parent gene strand -
Alternative splicing AT2G02800_circ_g.1 AT2G02800_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02800.1:1
AT2G02800.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGTAGGTAAAGACTCAACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAAC
GACTTGTCTTGCTAGAAACTCTTGAGCTCAATGAAGcaaccactctttatgaccttgataacct
tcagttttaagcttcttaaccgcaacaacaattccagaacccggttttgaagcagttaaagtag
ttccatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 338
Transcript exons: 798383-798720
CAACCACTCTTTATGACCTTGATAACCTTCAGTTTTAAGCTTCTTAACCGCAACAACAATTCCA
GAACCCGGTTTTGAAGCAGTTAAAGTAGTTCCATCAATCCACCCTTTAAACACATAGCCAAAAC
CTCCTTCACCTAAAAGACTATCGGGTCGAAAGTTCCTCGTAGCGTTCTTGAGCTCGTTAAAGGT
GAAAGCTTTAAGATTTGGTGATGACAAAATCTCTCCTTCTGTTCTTGGTGTAGGTAAAGACTCA
ACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAACGACTTGTCTTGCTAGAAA
CTCTTGAGCTCAATGAAG

Genomic sequence CAACCACTCTTTATGACCTTGATAACCTTCAGTTTTAAGCTTCTTAACCGCAACAACAATTCCA
GAACCCGGTTTTGAAGCAGTTAAAGTAGTTCCATCAATCCACCCTTTAAACACATAGCCAAAAC
CTCCTTCACCTAAAAGACTATCGGGTCGAAAGTTCCTCGTAGCGTTCTTGAGCTCGTTAAAGGT
GAAAGCTTTAAGATTTGGTGATGACAAAATCTCTCCTTCTGTTCTTGGTGTAGGTAAAGACTCA
ACACTGCTGTAAGAATTTATGCTTAAGCTTGAAGGAACTGTGGAACGACTTGTCTTGCTAGAAA
CTCTTGAGCTCAATGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.494643389
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress
Other Information
References Zhang et al., 2019