Detail information of Os07g0683600_circ_g.2


General Information
CircRNA Name Os07g0683600_circ_g.2
ID in PlantcircBase osa_circ_035354
Alias NA
Organism Oryza sativa
Position chr7: 28994039-28994234  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os07g0683600
Parent gene annotation Similar to Osr40c1 protein. (Os07t0683600-00)
Parent gene strand +
Alternative splicing Os07g0683600_circ_ag.1 Os07g0683600_circ_g.1 Os07g0683900_circ_igg.1 Os07g0683600_circ_ig.1 Os07g0683900_circ_g.1 Os07g0683900_circ_ag.1 Os07g0683900_circ_g.2 Os07g0683900_circ_g.3 Os07g0684000_circ_g.1 Os07g0684000_circ_g.2 Os07g0684000_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CA-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTAGTAGTAGCAATCAACGCTTACGATTTCTGGAATGGCGTCACATGATGTGAATTTGTCGC
AAAACCACTACTACACTAGTAGTTGATGATCTGAgtatgtacatacatacatacatacatcttc
ttcattagataattaattcagtctgtttcatatatgtcaaaaaatcagtcaacgtagtggttgg
agcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 196
Transcript exons: 28994039-28994234
GTATGTACATACATACATACATACATCTTCTTCATTAGATAATTAATTCAGTCTGTTTCATATA
TGTCAAAAAATCAGTCAACGTAGTGGTTGGAGCGTCGTAGTAGTAGCAATCAACGCTTACGATT
TCTGGAATGGCGTCACATGATGTGAATTTGTCGCAAAACCACTACTACACTAGTAGTTGATGAT
CTGA

Genomic sequence GTATGTACATACATACATACATACATCTTCTTCATTAGATAATTAATTCAGTCTGTTTCATATA
TGTCAAAAAATCAGTCAACGTAGTGGTTGGAGCGTCGTAGTAGTAGCAATCAACGCTTACGATT
TCTGGAATGGCGTCACATGATGTGAATTTGTCGCAAAACCACTACTACACTAGTAGTTGATGAT
CTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.597665535
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017