Detail information of Os07g0683900_circ_ag.1


General Information
CircRNA Name Os07g0683900_circ_ag.1
ID in PlantcircBase osa_circ_035358
Alias Os_ciR847
Organism Oryza sativa
Position chr7: 29004777-29009353  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0683600_circ_ag.1 Os07g0683600_circ_g.1 Os07g0683600_circ_g.2 Os07g0683900_circ_igg.1 Os07g0683600_circ_ig.1 Os07g0683900_circ_g.1 Os07g0683900_circ_g.2 Os07g0683900_circ_g.3 Os07g0684000_circ_g.1 Os07g0684000_circ_g.2 Os07g0684000_circ_g.3
Support reads 41
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCACCAGCATCAAGGACGAGGAGGGCTACCCTGCCTTCGCCCTCGTCAACAAGGCCACCGGC
CAGGCCATCAAGCACTCCCTCGGCCAGTCACACCCTgtgaagcttgtgccgttcaacccggagt
acgaggacgcgtcggtgctgtggacggagagcaaggacgtcggcaagggcttccgctgcatccg
catggtca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGAAGCTTGTGCCGTTCAACCCGGAGTACGAGGACGCGTCGGTGCTGTGGACGGAGAGCAAGG
ACGTCGGCAAGGGCTTCCGCTGCATCCGCATGGTCAACAACACCCGCCTCAACTTGGACGCCTT
CCACGGCGACAAGGACCACGGCGGCGTCCGCGACGGCACCACCGTCGTGCTCTGGGAGTGGTGC
AAGGGCGACAACCAGAGCTGGAAGATCCTCCCCTGGGGCCCCGAGGCTCACTCCTCCTCCCCCG
GCGCCGCCACCGCCTGCACCATCGGCGGCGTCCCCGTCCACACCGTCCGCGTCTTCTCCGCCGC
AGGCGAGGACTACTGCCTCACCGTCCGCAACGGCACCGCCTGCCTCGCCCCCAAGAACCCCAGG
GACGACTACCAGGTACGTATTCTCCTCTTAATTATATACTACTATTCAGATAGAGAAAAACCTT
GAGAGATTTGTGGTTGTGGTTTGTAGCACTGGATCAAGGACATGAGGCACAGCAACAAGATCAG
GGACGAGGAAGGCTACCCGGCGTTCGCGCTGGTCAACAAGGTCACCGGCGAAGCCATCAAGCAC
TCCACCGGACAGGGCCACCCGGTGAGCAAATCTTTTCTTACAAAATAAATATTTTCTTACATAT
GCAACGAATCTCTGAATCACAACGAACGATTTTCTCTGCGCATGCAGGTGAAGCTGGTTCCCTA
CAACCCAGAGTACCAGGACGAGTCTGTGCTGTGGACGGAGAGCAAGGATGTGGGCAAGGGCTTC
CGCTGCATCCGCATGGTGAACAACATCTACCTCAACTTCGACGCCTTCCATGGCGACAAGGATC
ACGGCGGCATCCACGATGGCACCGAGATCGTGCTGTGGAAGTGGTGCGAGGGTGACAACCAGCG
CTGGAAGATCCTCCCCTGGTGTAAGTTCCACCGCTAACAATGCACAATGCCATCGCTGATCGAT
TAATTTCCTTCGGATCCTCTGAAGAAATCAGAGATTCTGACACTTGGATTGCTGCTTCTTTGCA
TCTGCAGAGATTCCGGGGAGGGGGAGCTGCATTGCATTGCCATCGTCGTCGCGTCTGCTCTGCT
TCTACTCTAGCTAATAATTTGATCGATCTGCTACCGAAATAAGACCGTGTTCGTTCGTTCGATC
GATCGGAGTATGGCAGTCAATGGTGTCCGTCCGTCCTCGAGTTTGTGTCAGTGTGTGTCCTTTT
GCGAGCCAGTGATTGCTATGAGATGAAACAGTGGGTGATGTAAGTGCAGGAGGAGGGGCCATAT
GATTCAGAAATCTGATGCAACTCATCTTGCTTTCCCCTGTACTCTCTACTTTTCGTATGCCTAA
TGAATGAATTATGAATGGCTCATTTGTCTCGACCCTGTTGTTTCCCCTTCTTCTGTTTGTGACG
TGTAATTTTGCTGAAAAAAAAGGCGTGGTACTGGAACACGTTCTCCAAGTCATAATGATGAAAC
AAAATGCTTTGAATTTGGGTAGGACGAAACCCGATTTCGTCGAACTCGAAAAGCAGAGAGGCGT
CCAAGGCGTCGATCTCGTGAAGGGGTTCGGATTTTTATTCACCCGGACGAACCCCTTCTGGCCG
TCGCGAACCGTTGGATTGGAACGGGCGGCTAGGGCTAGGCCACGGAGGAGGACACACGATCGAA
GAGCACCAAGCGCAGGAGGCCGGCAAGGCAGTCCTGGTTGGGCTTTAGTGCACTGGGCTGCATC
ATGGCCCATACGTACAAACAGTGCAGGTAGCCACAAAAAGAAAAGAGTTCACATTAGATACCTC
AAGTAATGGGTATAGAGCGTCCCCTACTATCAAAACATTGTATATCGAGTCCCGCGGTGGTTTA
GACGGCAGTTGTATCATATGTGGAAAAAATATTGACCTAGTCTTCACCTGATAAGTCACTTACA
TGTAATTACAATCAGCGGAAAAAAACAAAAAAACATATGAAGAATAGGATCCACATGTCTGATT
TAAAAAAAATCATTGGTCCCAGATGTTATAATCTCGGGTCTGTTCACTTTAATATCATACCATT
TTTGGTAAAGTTGCCAAAAAATATGTCTATGTTTAGTTTGTTGCCAAATTTGATCACAAATCCT
GCTAAAATTGTAGCAATATTGTCATCTTGCCAATATTTTGGCACTGCCAAAACTTGGTAACGTT
TATTTTGGCTACAATCTAAACATGTCCCTCCTCCTTCCTCATTCCTCACTCTCCACCTTACGCC
TTTGGTCGATGGGTCGCAGAGACCCCAACCTAGCCAATGAACCATAGTGTTACGCTAAAGCATG
CCCACATGCCCACAAACGAGCCATAGTGCCCGTCCGAGAGAGAGAGAGAGAGAGAGCGGGGGGA
TAGGGAGAGGAGAGGAGAGGAGAGGTGGAGGTGTGAAGGGAGAAGATGAGTCCCACCTTTTTTT
TCCTTACCGGATGCAACTTAACCATAGTGGAAAAAACCGGACCGGTAGATGACCCAGTCACCCT
TCTGGTTCACCGGTCTCGGACAGTTTGACCATGAACCAGCCGATCGAACCGCAGTTTACTAAGT
GCATGCATGTAACGTATGTATTTCAATGCTAACACATACTCCATCCGTTTCAAAATGTTTGACA
CCGTTGACTTTTTAGCACATGTTTGACCGTTCGTCTTATTCAAAAAAATTATGAAATATGTAAA
ACTATATGTGTACATGAGAGTATATTTAACAATAAATCAAATGATATGAAAAGAATAAATAATT
ACTTAATTTTTTTAAATAAGACGAATGATCAAACACGTACTAAAAAGTCAACGGTGTCAAACAT
TTTGAAACGGAGAGAGTACATCCGATTGGTAGGATGGCCACGGGAGTTGCCATGCATCCCATTG
ACCAGGGATGAACCGGCCATCGTGTGGCCCATTCATTCATTGACTTGCCTTAGTCCGGCTGGAC
CAAAGGCGGTTTATTGCCCGGTTCATCACAAAACCGGCCGCCAACCTCTGGTTCCGATTTTTTT
CCGGTTAAACTGTCAGTCCGTTCCAGTTTTTTTTCCACTATGCAATTAACGCCATGTTGTAGAA
AACCACCGTACAACTTGCCAATAAGGTAGCTTCCTTCTTCTTTCTTTTTTTTTTTTGAGAACTA
GGTTAGCTTCCTTCTAGAGCTCCTTGTACGACCTCGTTGGAAAACTCATTGTTGGACCTAATTC
ATCACTCTTTTTATTTCAAACTAAAGGGTTTCCTTTTTAGACTTTTCTAATTGTTCCAAACTAA
TAGAGGTGGCATCAATCAAATTTGCTCTTTCTTGTCCTATCTAAGAGTATCTTGATGAAACTCT
TATCTTTATCGACTTTCGTAATCAAAATTTTAGTTTTTTCAAGCTGCTCAATGGTCACTTTACG
ACATGATTAGTGTTATGCTCGGTATTATTGTAGTTGAGGGAGAATAAGTGTAACTTCCGTTCAT
GATCGGCCCGTTAAGAATTTAGACCCATTAGTCCCACCCCCAACTCCCTTTTCTTTTCTTCCTT
TTTGGCCAAATTTTCAAATTTCTGGTGGATACACTGCACGCCCGGGGAATTTTCTGTCGAAAAA
TTGTATAGGTAATCCCTAATAAATTTCTAAATGTGCTTGGCTGATTCCTTTTCTTCTCGATCGA
TCCCGTTATTCCTTTTTAATCTTTTCTTGTGCGGAATTGCAGCACTTTTTCTCTGCTTGATCAC
AACGCAGCAAGGACATGAGAATACGTGAGATTCTCCGGGCGATGGAGCTGCACCGTGTGCTTTG
CTATCGTCTCGCGTCGCGCTCGCCTGCAATAATACGGCAGCCAGATCGAGATGGTTCCCAAAAC
GACTAGAAACGGAATCACGTAAAGCACCATGGATGGATGGAATCACCTTTTCCCCAGGAAAGCG
CAAGTGTGGAATGGCATCATCTATCCTACCAAGTTCCTAAGCCCCTGACCATGCAGTGCACGAA
TAATGCACATCGATCAGCTATCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGATAGCATCT
CGATCAGTGCTACTGATCAATCGATCATCCCCTATAAATCCCCCATCCCATTGCCATGCATAGA
GGCAGCACATCAACGATCGAACGAACAACGCACTCTGCAGCTAGCTATACAATCTCTGTTTAAT
TAGCTAGGTAGCTAGCGAGTCATAAATCAAGAAGCCATGGACTTTTACGGGCGGCGCGAGCAGT
ACGGCGGGTATGGCGGGTACGGTGGCGGCGGCGCCCTGGCGACGCCGGGGTACGCGCCGGCGGC
GCCGTACGGGATGTCGCAGGTGAACATCGAGGGGAACGGGTGTGGCAGGACGCTGCCGCCGCAG
CCGACGGTGAAGGTGTACTGCCGGGCGAACCCGAACTACGCGATGACGGCGCGGAACGGCGCGG
TGGTGCTGGCGCCGGCGAACCCCAAGGACGAGTACCAGCATTGGATCAAGGACATGAGGTGGAG
CACCAGCATCAAGGACGAGGAGGGCTACCCTGCCTTCGCCCTCGTCAACAAGGCCACCGGCCAG
GCCATCAAGCACTCCCTCGGCCAGTCACACCCT
Conservation Information
Conserved circRNAs osi_circ_007440*
PMCS 0.866363389
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015