Detail information of Os03g0736000_circ_g.1


General Information
CircRNA Name Os03g0736000_circ_g.1
ID in PlantcircBase osa_circ_021690
Alias NA
Organism Oryza sativa
Position chr3: 30166923-30170315  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os03g0736000
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os03t07360
00-01);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os0
3t0736000-02)
Parent gene strand -
Alternative splicing Os03g0736000_circ_g.2 Os03g0736000_circ_g.3 Os03g0736000_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0736000-01:7
Os03t0736000-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCAAGGGAATTATTTCCTCCTTGTATTTGGTTCTGAGATAATGAACCTCCAGACGTCGGAT
ATGAACTCCCCATCATGTTCATCATTTGAGGCGATCagctcactagcagcacatagctgagctt
catcccttggcatgctgcaaaccaaagaaaaatgataatctttaaaaaaacaaatgataatcac
gttatttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 72
Transcript exons: ,30170245-30170315
TTGGTTCTGAGATAATGAACCTCCAGACGTCGGATATGAACTCCCCATCATGTTCATCATTTGA
GGCGATC

Genomic sequence AGCTCACTAGCAGCACATAGCTGAGCTTCATCCCTTGGCATGCTGCAAACCAAAGAAAAATGAT
AATCTTTAAAAAAACAAATGATAATCACGTTATTTGTTGCCTAACATGATTTCAGTGGAACACA
CTTAATGGTAGATGTACCTATAGAAGATGTAAAACAGCGTTAACGTCTGGAACTTCTGAAAATG
TATAGGCTGCAAAAGACAGAATACATTACAATATATATATGTAATAACATGAAGTAAACACATC
AAGACAAATAGATGCCAAGTGTGTTTAAGAAAAACTAGGAAATAATGATACTCAACATCCTATA
AAAGATGGTAAATGTACAGCCAACTATCACATCTTAAAAAATAACCACAATGAATGGCAGCTTA
CTTGTAGCGGTGGAGGTTGCTCAGCATTGTAGCAAGCTGGAATATGAAACTCAGGTTCTCCTTT
TGCTGGCTCATTTGACCATGGAGAACCAAATGTCTTGTATAGATTGTCTGGTGAGTTCAAGTTT
AAACCCAATGTTGTCAAATCCATTCCTAAAGCAAGAGATGCTAAGTCAGCATCATTCATCCTGA
TAACTCCCAGCAATCCCATCAAACCATAAGGATCAGGTGGTGTTTGCCCTCCCTGGATGGACTT
TAGACTTTGATCTCTGTATGACTGTGTAGCTGAAGACACCTGCTGCAATCTGAAAGGATTTTGA
GTTTGAGGCTGCTGGTATTGTTGGATAAGTTGCTCGTATGATCCCAAACTAGAAGTTTGACTTG
CAGAAGATCTTAATCCGATATTTTGGGGACCAGCATTCTGAACCTGATAAATCATAATTGATCA
TTATTACTAGCATCAAAGGATCAAAACAGCAAAGTTGGATATATGCCTGATCAGAACCATGGTA
AACGCGGTAGACATTGATTGCTAGAGTTTTAAGAATTTCCATTAGTACTTACTGAATTAGCACC
TTGCTGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAATTAAAGCCAACTGACCTTGAC
ATCTGTGTAAATGTGCAAATTTGTCAGAAAAAAACACAAAGAAGAAATTGTTAAAAATTCAGAA
ACAGGGATGTACCGGATATTGCTGTGCTTGCATAACAGGCACATTATCATGAAGTTGTTCCTTG
TGATGCAACTCCATAGCATAATCTGAAGTGCTACCTGATAATTCGAAAGGTTAATACTTTGCAC
AACTCAGCAAAGGGCAAAGATGGTAGCACAGTGCGCACCAAAAGAGAAAGAAGATTAAATAGCA
ATCTGAGGTCAAGCATGTCCTATGATCATGGAATAAATTAAAAGGCAAGTACTGAAGTAGCAGG
TTACGACCATCTAAATACGTGACAAGTAATAAACTCAAAAGGCAGGAAATAGATTACAACCATC
CAAAATACATGACACTGACAACAGAGATCAAGAAGCAAAGCAGTCATAAAAGCGGCAAGTAAGT
TGGAAACATTTTTGGCAGACCAACGGACAAAATAAAACAAAGCTGTGATGCTTGGTGCCCATGT
CCCGCCAAATTGACAGGTATGACAGTAAACTCTTAGTGCCAAAATATGCATACACCTTTTTAAG
TGATTTAATCCAGAAACATACCGAAATTTAATCCATGATCTCCATGAATCCAAACTCAAACACG
TACTGTAAGTATTGTTCGAATAAAATTTTTGGCAAGCCTAAAATTTCTTTTAAACGTGAATAGC
AATTATTGCAAATTTACAGGTATGACAGTAATAAACTCTTAGTACCAAAATATGCACCCTTGTA
ATAGTAATAGATTAAGGAACATCCAAAATTTTAGTCCATAATCTCCATGAATCCAAATTCAAAC
CATGTACTATAAGTATCATTCGAAAAAAAATTAGCAACTCTAAACTATATTTTTAAACGTTAAT
GTTGGATATTGCAAACTTTCTGTGAGCAAAATCTGTGGGCCCTAAAGTTTTGCAAAAAAAAAAA
GTCACAAATATTTTTTCACCGCCATTAATAGTCCCAAATAAGTTCCATAATTTTTAGAGTTGCC
TCAAGGCTTCGATCACAGTTGCCTCAAAAATGTGACCGCCAGGCATGTGGCGCTAAGATAAATT
TCCCAGGTTCTAAGTTTAGTTGGCACAGCTAGGTCAGATGATCTAAGTTTCCCTTCAGTTAGTT
TACTGCCACGATAGATATAATTGTACATTCGCTCGATTGAATTGGACTCGAACATCTTGTAATG
GTTCAGCTGCTAAAACTCCTTACGTGTTGCCTATTGGTTCATTTTTCCGTATGACCATCAGTTT
TCATAAACAAAACGATAGCCATGGGTTAGGCTATGTTGCCAAAACAAGAAACATAACAAGAGGG
TACCAAAAACTATGTATGAGTTACGATAAGAAAACCATTTACTACCGTCGTCAAAAGTAAATAA
AAGGTTCACCAACGTGGATGTTATCATGTCTCCATCAATATAAGATACCATTTCATGCCCAAAT
TGAAGGGTACTTGTTTTGGCAATGGAAACTGAGACAATGGGATTGCTAGGACCTCTATACATGT
TTGCCGGTTGCACATCAACGGATCGACCCTTTTCTCCAAGCAACGTGTTAGCACATTTTCATTG
TCGATCATCAATGTCTATTGTCTAATTATGATTTGTTGTAATCCCAAGTGCTCCGATATCATAA
TTGTAGTTTCCAGCACATACCGGTAGCCCCATCCTTAGGCCGTCTTAAATTAACCAAAAGTGGG
AATGCCATTGCAAGTATATGAATGGTACTATAATTATTCAGTAATGCAAGAAAAAATATGGCAG
CCTTCCATAAAAGATAAAATGTCAAAGCAAAATGGATTTTGTAACACGTAGTTCTATGACATGC
TAGCGAGGGCCAGTTGAAAGTTGAGACAACAAATTGTAACAGTCATGCAGCTGATATTGCATGA
TACACCAAGTATAATTAATCAAAACACCCTCACTGAATGTCAACGAACGTTCTACAATAATATA
GCTGTAACCACCTTTGTATCCAGGTAAAGCTGGGAAGTCTTCATTTTGAATGCTAAATTCCTGG
TTTTGTTGAACAATGGTGTTAACACCAACTCCTTGCTTCCGCAGTGAGCCTGCTATTTAAGGAA
ATTATCAAGGTATCCTTCCAGTTAATGAAAAATATCTTTGAAATCATTACCATATTGTCCTTGC
GGACCACCAGCAGAACTAGGTCGACCAGTCAATTGGGGAAAATCATTCATGTCATATGGAGCAC
TGTCATTGGCATCATGCAGCATCCCCATGGAACCAAGGGAATTATTTCCTCCTTGTATTTGGTT
CTGAGATAATGAACCTCCAGACGTCGGATATGAACTCCCCATCATGTTCATCATTTGAGGCGAT
C
Conservation Information
Conserved circRNAs NA
PMCS 0.328700619
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017