Detail information of 1_circ_ag.14


General Information
CircRNA Name 1_circ_ag.14
ID in PlantcircBase ath_circ_004884
Alias NA
Organism Arabidpsis thaliana
Position chr1: 10473074-10475878  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT1G29910_circ_g.2 1_circ_ag.3 1_circ_ag.4 AT1G29910_circ_g.5 AT1G29910_circ_g.6 AT1G29910_circ_g.7 AT1G29910_circ_g.8 AT1G29910_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 1_circ_ag.13 1_circ_ag.15 1_circ_ag.16 AT1G29920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G29920_circ_g.5 1_circ_ag.6 AT1G29920_circ_g.7 AT1G29920_circ_g.8 1_circ_ag.9 AT1G29920_circ_g.10 AT1G29930_circ_g.1 AT1G29930_circ_g.2 AT1G29930_circ_g.3 AT1G29930_circ_g.4 AT1G29930_circ_g.5 AT1G29930_circ_g.6 AT1G29930_circ_g.7 AT1G29930_circ_g.8 AT1G29930_circ_g.9 AT1G29930_circ_g.10 AT1G29930_circ_g.11 AT1G29930_circ_g.12 AT1G29930_circ_g.13 AT1G29930_circ_g.14 AT1G29930_circ_g.15 AT1G29930_circ_g.16 AT1G29930_circ_g.17 AT1G29930_circ_g.18 AT1G29930_circ_g.19 AT1G29930_circ_g.20 AT1G29930_circ_g.21 AT1G29930_circ_g.22 AT1G29930_circ_g.23
Support reads 2
Tissues aerial
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCCGCAGGGGAAAGGTTCACA
GCCTTTCCGGCGAAAGCAGGGGAGGAGAGAGCCATTtacttgactcggtcggatccgtaccatg
ggctgcctgatggaccctttggcttggcaacagtcttcctcattgtcacacggccgcttccgag
gacttcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACTTGACTCGGTCGGATCCGTACCATGGGCTGCCTGATGGACCCTTTGGCTTGGCAACAGTCT
TCCTCATTGTCACACGGCCGCTTCCGAGGACTTCAGATGCCGCGGGGGAAAGGTTCACAGCCTT
TCCGGCGAAGGCAGGGGAGGAGAGAGCCATTGTGGAGGCGGCCATTGAAACTTTTTGTGTTTTT
TTTTTTTTTTGGTGACTAACTTGTGAGTGAGAGTGATTGAAAATGGTTAGGTAGGGTTGGATTA
TATAGGAAAATTGCGAGTAACGTTTGTTATCTATGAAGTAATCTATATCTCTTTACTCATTGGA
TTTTTGAGATTTTGGTTTTAACGTTTACTATTCTTATGTGGCAGTCTCTAGTCCACTAGCTTTT
GCTATGATTTTTTCATTGCAGCCAAAGCATTTCGAGACCACATGTTGCAAGTCTTTTGGAAGCA
GCTTAATAGTTCTGAATAGAGATAACTTATTTGTGTGATCTTTCCTTTAAATAAAAGTAAAGAT
AGTGTGATATTGATGACCGAAACATCATAGAGAGTAACATTAGAAGTCCAACATCACTACCAAT
TTACAATAACATTGATTCCATTGTCAGTTTATCCACTAACCTGATAAATCTCATGAATAATGTA
ATTAATTTAACCTTGAAACTCAGTTGTTTTTGCTTTTAAATCAAAATGCAAAGACTCAAAAACA
CTGATTATTTGCATATTTTGCAGAAACATAAAAACTATCCAATTGATTGTTCAAACACTGAAAA
ACTATCATCTGGTATGTTCAACATCATTGGTTTAGACAATATGTAGCTTGTAAATTTTTAATCA
TGATTCTAGTAATCTGTTTTGTAAACTTGAACAACCTTTTAAAATCTAAAGTAACTCATTCTAT
CTTTCTAATTCATCATAAAATTCAAAATTTGTAGAGATGAAAAACCACAACAGAAAACATTTTG
TTAGAGGTTTAATTTGCAACAAACTATTCCTCAATCACTTTGATAGAAACTCTTTAAGCTATCA
TTCGTAGTTTACTGATTTTTTCATCACCCTAAATAATTTCGACAGTAAAAGTTTTTTACAAAAC
ACAATTTTATTTTTACAATCACTAATTGCCCTCACACATGAATTCACCCACTCTTTGGAACGCA
ATTTCTAAGCTTTGGGGTGAAAATGAATAAACCTAGCTATATTCATGTTCTCCTGTTCTATTCT
CTTGTTCTTTCGATACCACACACCAATGACACAGGCGCTAGCTCTTCTATGCTCCAAACATATA
TGTTATCATGTGTTCACCAATTATAGCTAGTGTGACAAGCGAACCTGGTCCACAGAGGATGTCA
CGGAAGGCAATCTCTCGCACGACAATGGATTTTAACTAATATGTAAGATATATGATCAGTCCAT
TCAATGCGTGGATGTGATTTTAATATGGTATCAGAGCAATGTGATATATTGTTATCCAGATATC
GTATGAGCCAATGTTACGAGCTTCAGAATCAACCAAACACGGAAGAAACTACTTCATTATCTAT
TCTCTAATTCTCTCAATCAGAAGAAAAAAAACGATTGCAATTTCTTCTTCAATGCGATCATATT
TTGTGAAGAGACGATATACAAGTTAAATCAAGGGAATATAAAAAACTTATATAAAAGACTCTTT
CGTGTTGTTCAAGCTAACATCCGAGAATCACATTTTCTCTTGATTTGAAAAGAACATAATCTTT
GTACCCATTGCCTTAATATGTTCAATCACGTTGCTCGATTGTAGAAATAGCCTCTACAACGGAG
TGAACCCAAGAACTGAAAATCCAATTCAATTATAGTTCTACGAAACATATTTAGAGAACAATGA
GTTATTTGATTAATGACAAATCATACAAAGTCTTTGCAAATTTACATCTGAAAGTCTCTACCAT
CCACCACAAACACAAACCTACTCTTTCTCCTCCTGTCTCTCACTCGAATTCAAAAGATTGAAAG
AAAAGTAAATTACAAACAGATAGAACTTGGCTCACTTTCCGGGAACAAAGTTGGTGGCAAAGGC
CCAAGCGTTGTTGTTGACTGGATCGGCCAAATGGTCAGCAAGGTTCTCTATCGGTCCCTTACCA
GTGACGATGGCTTGAACGAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGAGCT
CCTTTACCTTCAACTCAGCGAAGGCCTCTGGGTCGGTAGCCAAACCCAATGGGTCGAAACTGCC
ACCGGGGTAAAGCAAGTCCTCGGCCTCTCCCAATGGCCCATTTCCTGCGACTCTGTAACCTTCA
ACGGCTCCCATCAAAATAACTTGTGTGGCCCAAATGGCCAAAATGCTCTGAGCGTGAACCAAGC
TAGGGTTTCCCAAGTAATCGAGCCCTCCATCGCTGAAGATCTGTGAACCAGCCTTGAACCAAAC
TGCCTCTCCAAACTTGACTCCGTTCCTGGCCAAAAGCTCAGGGAAGACGCAGCCTAGGGCTCCG
AGCATGGCCCACCTGCTGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGTCAG
CGGATAGACCAGCTGTGTCCCATCCGTAGTCTCCAGGGAACTCTCCGGTAAGGTAGCTGGGTGA
CTCGCCAGAGAATGGACCCAAGTACTTGACTCGGTCGGATCCGTACCATGGGCTGCCTGATGGA
CCCTTTGGCTTGGCAACAGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCCG
CAGGGGAAAGGTTCACAGCCTTTCCGGCGAAAGCAGGGGAGGAGAGAGCCATT
Conservation Information
Conserved circRNAs NA
PMCS 0.396682453
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017