Plant Circular RNA Database

Detail information of 1_circ_ag.6

			
						 General Information
					
						CircRNA Name
						1_circ_ag.6
					
						ID in PlantcircBase
						ath_circ_004892
					
						Alias
						1:10475203-10478799
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 10475203-10478799  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT1G29910_circ_g.2 1_circ_ag.3 1_circ_ag.4 AT1G29910_circ_g.5 AT1G29910_circ_g.6 AT1G29910_circ_g.7 AT1G29910_circ_g.8 AT1G29910_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 1_circ_ag.13 1_circ_ag.14 1_circ_ag.15 1_circ_ag.16 AT1G29920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G29920_circ_g.5 AT1G29920_circ_g.7 AT1G29920_circ_g.8 1_circ_ag.9 AT1G29920_circ_g.10 AT1G29930_circ_g.1 AT1G29930_circ_g.2 AT1G29930_circ_g.3 AT1G29930_circ_g.4 AT1G29930_circ_g.5 AT1G29930_circ_g.6 AT1G29930_circ_g.7 AT1G29930_circ_g.8 AT1G29930_circ_g.9 AT1G29930_circ_g.10 AT1G29930_circ_g.11 AT1G29930_circ_g.12 AT1G29930_circ_g.13 AT1G29930_circ_g.14 AT1G29930_circ_g.15 AT1G29930_circ_g.16 AT1G29930_circ_g.17 AT1G29930_circ_g.18 AT1G29930_circ_g.19 AT1G29930_circ_g.20 AT1G29930_circ_g.21 AT1G29930_circ_g.22 AT1G29930_circ_g.23 						
					
						Support reads
						1/1
					
						Tissues
						seedling;leaf
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_ag.6
ID in PlantcircBase	ath_circ_004892
Alias	1:10475203-10478799
Organism	Arabidpsis thaliana
Position	chr1: 10475203-10478799 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT1G29910_circ_g.2 1_circ_ag.3 1_circ_ag.4 AT1G29910_circ_g.5 AT1G29910_circ_g.6 AT1G29910_circ_g.7 AT1G29910_circ_g.8 AT1G29910_circ_g.9 1_circ_ag.10 1_circ_ag.11 1_circ_ag.12 1_circ_ag.13 1_circ_ag.14 1_circ_ag.15 1_circ_ag.16 AT1G29920_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G29920_circ_g.5 AT1G29920_circ_g.7 AT1G29920_circ_g.8 1_circ_ag.9 AT1G29920_circ_g.10 AT1G29930_circ_g.1 AT1G29930_circ_g.2 AT1G29930_circ_g.3 AT1G29930_circ_g.4 AT1G29930_circ_g.5 AT1G29930_circ_g.6 AT1G29930_circ_g.7 AT1G29930_circ_g.8 AT1G29930_circ_g.9 AT1G29930_circ_g.10 AT1G29930_circ_g.11 AT1G29930_circ_g.12 AT1G29930_circ_g.13 AT1G29930_circ_g.14 AT1G29930_circ_g.15 AT1G29930_circ_g.16 AT1G29930_circ_g.17 AT1G29930_circ_g.18 AT1G29930_circ_g.19 AT1G29930_circ_g.20 AT1G29930_circ_g.21 AT1G29930_circ_g.22 AT1G29930_circ_g.23
Support reads	1/1
Tissues	seedling;leaf
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTT
CAAGCCATCGTCACTGGTAAGGGACCGATAGAGAACgaagaatccaaacatagagaacatagcc
aatcttccgttcttgagctcctttaccttcaactcagcgaaggcctctgggtcggtagccaaac
ccaatggg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGAGCTCCTTTACCTTCAACTCA
GCGAAGGCCTCTGGGTCGGTAGCCAAACCCAATGGGTCGAAACTGCCACCGGGGTAAAGCAAGT
CCTCGGCCTCTCCCAATGGCCCATTTCCTGCGACTCTGTAACCTTCAACGGCTCCCATCAAAAT
AACTTGTGTGGCCCAAATGGCCAAAATGCTCTGAGCGTGAACCAAGCTAGGGTTTCCCAAGTAA
TCGAGCCCTCCATCGCTGAAGATCTGTGAACCAGCCTTGAACCAAACTGCCTCTCCAAACTTGA
CTCCGTTCCTGGCCAAAAGCTCAGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCT
GTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGTCAGCGGATAGACCAGCTGTG
TCCCATCCGTAGTCTCCAGGGAACTCTCCGGTAAGGTAGCTGGGTGACTCGCCAGAGAATGGAC
CCAAGTACTTGACTCGGTCGGATCCGTACCATGGGCTGCCTGATGGACCCTTTGGCTTGGCAAC
AGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCCGCAGGGGAAAGGTTCACA
GCCTTTCCGGCGAAAGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGAAACTTTTTTGT
GTTTTTTTTTTTTTTATGACTAACTTGTGAGTGAGAGTGATTAAAACTGGTTCGATAGTGTTGG
ATTATATAGGGATATTGTAACGTTTGTTATATCTGAAGTAATCTTTATCTGTTCATTCATTGGA
TTTTAAGATTTTTGTTTTATCGTTTAGTAGTCTTACGTGGCAATCTCTAGTCCACCAGCATTTG
TTTTGATTTTTTCATTGCAGCCAAGCGTTTTGTGACCACAAGTTATGAGCCACTGAATACTTCA
ACGGTTACACTTACTTACACCCTCGTGACAAGAATGATTTTTGCTACAACCCAATAACTAAAAC
TTAAAGTATAACATTTTGAAAATATAGATTCTGATGATCGAAACATTAATATAAAGTAACATTA
TAAAAAGCATTTACCCACACATAAATATCAATATTTTCAATGGTAATTAGTTCATCATCACTAC
CAGTTTAATTTCAATTATGAATCGATTTCATCGTCACTTTATCCAATAACCAAAATAATCTCAT
GAATTATGTGATATCACCTTAAAACTTTGACGTTTTACTCTTTATCGAAGAAACACAACGATTA
ATGAAACACTGTTTTAACTTATCGACCATTTCTAAGAACATGAAAGAACTATATTAATTCATAT
GGCATGTTCATCATCATGGGTTTAGACTTTAGAGAACATATAGCTACTTTTTTTCTTATCATGA
TTCAAGTTATCTTTATTGTAAACTTCAACAACCTTTTGAACAAACTTATTTATTCGCTTTTTCC
GAATTCATCAACAAATTACTCCTCAATCACACTCCTATAGAAAACGGTTTAAGCTATCATTACA
TGTCTAGTTGGTTTTACTCAGCCCTAGAAGTGTTGTTTATTGCATCACTTTCCACGAAGCACAA
TTTTTCTTTTTTACAATCACTAGACCTCACAGGCTCACACATATGCTTTAGAGCACATTCTAAA
CTTTGAACTATAAAAGCTGTTAACACTAATACACTATGCGTTCTTTTTTGCTCCAAACACTTTT
GATCCATTATTAGGAGACACTCCACTTAGAAAGATTTTCTAATCCTTTGGTCAACTAGGAAGTT
CAAGGTTTTTCTAAACAGAAATTCATTTCACAAGTAATTTAATTTATAAGGAAATGAATAGAGA
AATCAAATCATTGAAGAACTACAAAATATAGATTCAAGGTCAGGTCTAAGAAAATATTCCTGAA
GCTCAAAAAAGAGTTTTCCTCTCACATTATAGAATTGGCCTTTACTTCAACATTTTCCCACCTA
TTCCACATTTGGTCAGAACATTTTTAATTACTTGTGGATCAATTTCCGGTTGAAATGGGTTTGG
TGAATATCCGGTTCAGTTATATGGTGGCCGTTGGAATTGGCTTATTAGTTGTGGCCGTTGTTGA
AGCCGTTGGTATTGGTAAGGGAGAAGCAGACTTGTGGCTATGAGTCTATGACCATGACTCGTGA
TTATGGAGCTGTCTTATGACCCTGACCATCACCTTGATCTGGTGGATTCCAATGTTTTCTTCTT
CTTCTAATAAAATATTATGGTCAATACAGGTGCTAATTAAGATGGTAATAATTTCTTATGTTTC
TGTGGTAAAGTTTGATTCAATTCCGTAGTTTTAGATAATCTTATTTCCATACATAAATTTTATA
GTTTTATCTACTTTGTTCTTATGTTTTATCTCTAGCCAAGAGTTATTATTATTATCAGAAGAAG
AAAAAAAAAAGAAGCATATATACAAAAGGTTTAATAAAATGTATTATACAAGGCAATTATCCAA
ATTTTTTTTGTTTTGGTTTACATTGATGCTCTCAGGATTTCATAAGGATAGAGAGATCTATTCG
TATACGTGTCACGTCATGAGTGGGTGTTTCGCCAATCCATGAAACGCACCTAGATATCTAAAAC
ACATATCAATTGCGAATCTGCGAAGTGCGAGCCATTAACCACGTAAGCAAACAAACAATCTAAA
CCCCAAAAAAAATCTATGACTAGCCAATAGCAACCTCAGAGATTGATATTTCAAGATAAGACAG
TATTTAGATTTCTGTATTATATATAGCGAAAATCGCATCAATACCAAACCACCCATTTCTTGGC
TTACAACAACAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCAACCTCAATGGCCGCCTCA
ACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTCAAGCTTTCCCCCGCGGCATCTG
AAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGCCCATCAGG
CAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTCTCTGGCGAATCACCGAGC
TACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTTTCAGCTGACCCCG
AGACATTCGCAAGGAACCGTGAACTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCT
AGGCTGCGTCTTCCCTGAGCTTTTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTC
AAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTC
ACGCTCAGAGCATTTTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTA
CAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTC
GACCCATTGGGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGA
ACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGG
ACCGATAGAGAAC
						
					

			
		

Sequences
Splice junction sequence	GTTGAAGGTGAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTT CAAGCCATCGTCACTGGTAAGGGACCGATAGAGAACgaagaatccaaacatagagaacatagcc aatcttccgttcttgagctcctttaccttcaactcagcgaaggcctctgggtcggtagccaaac ccaatggg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGAGCTCCTTTACCTTCAACTCA GCGAAGGCCTCTGGGTCGGTAGCCAAACCCAATGGGTCGAAACTGCCACCGGGGTAAAGCAAGT CCTCGGCCTCTCCCAATGGCCCATTTCCTGCGACTCTGTAACCTTCAACGGCTCCCATCAAAAT AACTTGTGTGGCCCAAATGGCCAAAATGCTCTGAGCGTGAACCAAGCTAGGGTTTCCCAAGTAA TCGAGCCCTCCATCGCTGAAGATCTGTGAACCAGCCTTGAACCAAACTGCCTCTCCAAACTTGA CTCCGTTCCTGGCCAAAAGCTCAGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCT GTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGTCAGCGGATAGACCAGCTGTG TCCCATCCGTAGTCTCCAGGGAACTCTCCGGTAAGGTAGCTGGGTGACTCGCCAGAGAATGGAC CCAAGTACTTGACTCGGTCGGATCCGTACCATGGGCTGCCTGATGGACCCTTTGGCTTGGCAAC AGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCCGCAGGGGAAAGGTTCACA GCCTTTCCGGCGAAAGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGAAACTTTTTTGT GTTTTTTTTTTTTTTATGACTAACTTGTGAGTGAGAGTGATTAAAACTGGTTCGATAGTGTTGG ATTATATAGGGATATTGTAACGTTTGTTATATCTGAAGTAATCTTTATCTGTTCATTCATTGGA TTTTAAGATTTTTGTTTTATCGTTTAGTAGTCTTACGTGGCAATCTCTAGTCCACCAGCATTTG TTTTGATTTTTTCATTGCAGCCAAGCGTTTTGTGACCACAAGTTATGAGCCACTGAATACTTCA ACGGTTACACTTACTTACACCCTCGTGACAAGAATGATTTTTGCTACAACCCAATAACTAAAAC TTAAAGTATAACATTTTGAAAATATAGATTCTGATGATCGAAACATTAATATAAAGTAACATTA TAAAAAGCATTTACCCACACATAAATATCAATATTTTCAATGGTAATTAGTTCATCATCACTAC CAGTTTAATTTCAATTATGAATCGATTTCATCGTCACTTTATCCAATAACCAAAATAATCTCAT GAATTATGTGATATCACCTTAAAACTTTGACGTTTTACTCTTTATCGAAGAAACACAACGATTA ATGAAACACTGTTTTAACTTATCGACCATTTCTAAGAACATGAAAGAACTATATTAATTCATAT GGCATGTTCATCATCATGGGTTTAGACTTTAGAGAACATATAGCTACTTTTTTTCTTATCATGA TTCAAGTTATCTTTATTGTAAACTTCAACAACCTTTTGAACAAACTTATTTATTCGCTTTTTCC GAATTCATCAACAAATTACTCCTCAATCACACTCCTATAGAAAACGGTTTAAGCTATCATTACA TGTCTAGTTGGTTTTACTCAGCCCTAGAAGTGTTGTTTATTGCATCACTTTCCACGAAGCACAA TTTTTCTTTTTTACAATCACTAGACCTCACAGGCTCACACATATGCTTTAGAGCACATTCTAAA CTTTGAACTATAAAAGCTGTTAACACTAATACACTATGCGTTCTTTTTTGCTCCAAACACTTTT GATCCATTATTAGGAGACACTCCACTTAGAAAGATTTTCTAATCCTTTGGTCAACTAGGAAGTT CAAGGTTTTTCTAAACAGAAATTCATTTCACAAGTAATTTAATTTATAAGGAAATGAATAGAGA AATCAAATCATTGAAGAACTACAAAATATAGATTCAAGGTCAGGTCTAAGAAAATATTCCTGAA GCTCAAAAAAGAGTTTTCCTCTCACATTATAGAATTGGCCTTTACTTCAACATTTTCCCACCTA TTCCACATTTGGTCAGAACATTTTTAATTACTTGTGGATCAATTTCCGGTTGAAATGGGTTTGG TGAATATCCGGTTCAGTTATATGGTGGCCGTTGGAATTGGCTTATTAGTTGTGGCCGTTGTTGA AGCCGTTGGTATTGGTAAGGGAGAAGCAGACTTGTGGCTATGAGTCTATGACCATGACTCGTGA TTATGGAGCTGTCTTATGACCCTGACCATCACCTTGATCTGGTGGATTCCAATGTTTTCTTCTT CTTCTAATAAAATATTATGGTCAATACAGGTGCTAATTAAGATGGTAATAATTTCTTATGTTTC TGTGGTAAAGTTTGATTCAATTCCGTAGTTTTAGATAATCTTATTTCCATACATAAATTTTATA GTTTTATCTACTTTGTTCTTATGTTTTATCTCTAGCCAAGAGTTATTATTATTATCAGAAGAAG AAAAAAAAAAGAAGCATATATACAAAAGGTTTAATAAAATGTATTATACAAGGCAATTATCCAA ATTTTTTTTGTTTTGGTTTACATTGATGCTCTCAGGATTTCATAAGGATAGAGAGATCTATTCG TATACGTGTCACGTCATGAGTGGGTGTTTCGCCAATCCATGAAACGCACCTAGATATCTAAAAC ACATATCAATTGCGAATCTGCGAAGTGCGAGCCATTAACCACGTAAGCAAACAAACAATCTAAA CCCCAAAAAAAATCTATGACTAGCCAATAGCAACCTCAGAGATTGATATTTCAAGATAAGACAG TATTTAGATTTCTGTATTATATATAGCGAAAATCGCATCAATACCAAACCACCCATTTCTTGGC TTACAACAACAAATCTTAAACGTTTTACTTTGTGCTGCACTACTCAACCTCAATGGCCGCCTCA ACAATGGCTCTCTCCTCCCCTGCCTTCGCCGGTAAGGCCGTCAAGCTTTCCCCCGCGGCATCTG AAGTCCTTGGAAGCGGCCGTGTGACAATGAGGAAGACTGTTGCCAAGCCAAAGGGCCCATCAGG CAGCCCATGGTACGGATCTGACCGTGTCAAGTACTTGGGTCCATTCTCTGGCGAATCACCGAGC TACCTTACCGGAGAGTTCCCCGGAGACTACGGATGGGACACCGCCGGACTTTCAGCTGACCCCG AGACATTCGCAAGGAACCGTGAACTAGAAGTTATCCACAGCAGGTGGGCCATGCTCGGAGCCCT AGGCTGCGTCTTCCCTGAGCTTTTGGCTAGAAACGGAGTCAAGTTCGGAGAGGCGGTTTGGTTC AAGGCCGGTTCACAGATCTTCAGCGATGGAGGGCTCGATTACTTGGGAAACCCTAGCTTGGTTC ACGCTCAGAGCATTTTGGCCATTTGGGCCACACAAGTTATTTTGATGGGAGCCGTTGAAGGCTA CAGAGTCGCAGGAAATGGGCCATTGGGAGAGGCCGAGGACTTGCTTTACCCCGGTGGCAGCTTC GACCCATTGGGTTTGGCTACCGACCCAGAGGCATTCGCTGAGTTGAAGGTGAAGGAGCTCAAGA ACGGAAGATTGGCTATGTTCTCTATGTTTGGATTCTTCGTTCAAGCCATCGTCACTGGTAAGGG ACCGATAGAGAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.30868536

Conservation Information
Conserved circRNAs	NA
PMCS	0.30868536

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 1_circ_ag.6

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