Detail information of BGIOSGA016117_circ_g.2


General Information
CircRNA Name BGIOSGA016117_circ_g.2
ID in PlantcircBase osi_circ_014224
Alias Chr04:13830105_13830652(MH63RS2), Chr04:14476445_14476993(ZS97RS2), Chr04:13830105_13830652(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 12189607-12190155  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ, CIRCexplorer2, find_circ, CIRCexplorer2, find_circ
Parent gene BGIOSGA016117
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA016117-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTATTAATGGTCAATATTGACCTTTTTGAATGCTTAGTATTCTGCTTCTGACCAATGCTTCT
TCGAATTGCATATACAAGTATCCAGATTGTGTTTATggtattattattgtcatttttttttctg
ttgtaatagtgttttttttgggtgttttgccttgtgaccatttattcaagtttctttgctttct
ccaaccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATTATTATTGTCATTTTTTTTTCTGTTGTAATAGTGTTTTTTTTGGGTGTTTTGCCTTGTG
ACCATTTATTCAAGTTTCTTTGCTTTCTCCAACCAGCTCTTATAATGATTACTCCAGATTTGTC
ACTTAAACTACCAGTTGGTGACTTAGTGGTGTTAGCCAAACTTGCATTTGTGATTCCCCCCCCC
CCCCCTCCCCTAGGTGGCAGCTAGTATTCAGGTGCCACCCCCCCACCTATGCAGACCCTCCGAA
TTAGATGATTAGGCAGTAGGCACTAGCCACCAGGTTGAGCCTATCACTTTCGTAACCTCTTGCC
CCTTGGTGAATACTGACATATGATGCTTGGTTAGCTACCACTTTTTTTGTTAAATGTCTAGGTT
ATTAGCATATTACTTTCTTTGTGCTGTTAATGTTTCATTTCAGATAGTACGATTGACTGATTGA
CTTTTATTAATGGTCAATATTGACCTTTTTGAATGCTTAGTATTCTGCTTCTGACCAATGCTTC
TTCGAATTGCATATACAAGTATCCAGATTGTGTTTAT
Conservation Information
Conserved circRNAs osa_circ_023387
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021