Detail information of Os01g0909500_circ_g.1


General Information
CircRNA Name Os01g0909500_circ_g.1
ID in PlantcircBase osa_circ_005378
Alias Os_ciR4525
Organism Oryza sativa
Position chr1: 39616453-39621013  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os01g0909500
Parent gene annotation Hypothetical conserved gene. (Os01t0909500-02);Similar to cDNA c
lone:J013116D08, full insert sequence. (Os01t0909500-03)
Parent gene strand -
Alternative splicing Os01g0909500_circ_g.2 Os01g0909500_circ_g.3 Os01g0909500_circ_g.4 Os01g0909500_circ_g.5 Os01g0909500_circ_g.6 Os01g0909500_circ_g.7
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0909500-03:2
Os01t0909500-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGTGCTCTATTTCCTTTACAAAAGCCTTTTGCATGGCGGATGCAACTGTAGCAGACTTTGCAG
GAAGTTTACTTTTCTGTGCTTCTTTGATCATATTATctatgactaacaatctaacacagactag
tgttatctcgtatcaattggttgcagggtgtttcgcctttgaatgatccttcagagcaccagag
gagttgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATGACTAACAATCTAACACAGACTAGTGTTATCTCGTATCAATTGGTTGCAGGGTGTTTCGC
CTTTGAATGATCCTTCAGAGCACCAGAGGAGTTGAAAGTCCTGAGCAAGTTAGCAAGTGCCTAT
GTGAGGATATAGCAATATTTCAATGGTAAATCATTAAGTAAAAGGAACAATAATTTACTTTTTG
CATGAGTTGCAGACATAGCTAGCAGAACGCTTAGGCGTGTCGTTCTTTATGGGCGTCCTCTTTG
CCTGTTTTGCTGGGTGAGGGTTTGTAACTTGAAGATGACTACCTCTCTTGCTAGTATTAGTACC
TGCACACAAGATCAACAAGAAGTATGAATTTGCAATCTTCATGACGAAAAAATTGTGAGTTCAA
CAAAAACAAATCAAAAGAAACAAATTCCAACCAGTTTTGTTGTCCGTAATTGGTGCTTCTATCT
TTGCCATCTCATGTGGAAATGTCTTCAAGGGTGTTACCACTGGTTCATTTTCCTCTTTAGTATT
CTGGGAGATCAAGGAAACAACAACAACAAAAAAGTTACAAGGTTTCTGAGAAATTAAGCATCAG
AAACTATCATCCACTTAAGTATCTCATACTGTTGGTGTAATATGCAACTTTATGAGGGACCTAC
TTGTAATTCTGTTGAATAAAGATATGTATGTGTGGGGGTGCTGATCGGTGGTGAGGCCAACAAG
CTCATTCCACCCCTCTCTCAGGCGTTAGGCAGCAGCAGCAGGAAGGCGGGAGAAGGTAGCAGCA
GGAGCAGCACCGGCGTGCGGGGCAGCAGCAGCGCCGCCGCGCCACTCGGCGCGCTGGTAGCAGC
CCCGCTGCGCGCACGCGAGGCCCTCAGGTTCGTGGGCTTCCTGGAGGAGAGGAGCTCTGTGTGC
GCAAGCTAGGAGGAAGAAAAGACGGTACTGTTTTGGGAGTTGGATTTGGGACTGATTTGTGAGC
TTGTTGTGGGAAAGAGAGCAAGTTTATTTCTGTTTCTTTGTTGACAGGTGCGGGAAGAAGCCTG
GTCCAGTTATGTGATTTGGGTTGCTAAGAGCACAAGCGAGGATATGTTCCCGTTCTTTGCTTGC
TGAAAACTTGATGGAATAAGAGTTGCCGTGATTGTGGTGAACACGGGCAGCAAGGAGTGTTAGT
TGGCATCGCTCTAGGAGATGGATCCATTGAAAGGGGTTGAGGAATCATCGCTGGTCACTAAAGG
CGAGATGAAAAGCCTACTACAAGACTTGATAGCTACTGGGATGATGGGGCCTAGAATAGGAGGG
GCATCACCTGAAATAAAGCTAGAGCAAATGCCGAATGAAGTTAAGTTGGAGGAGAGCCAAAATT
ACTTGAGCTGGTCTAGAAGGACAAGATTGATGTTGAGGGCAAAAGGGGTAGAACACTATTTGGA
GGAAACTTGTATTGAACCAGATGACAAGCTTAGTGTGGACTGGAAGGTGTGGAATTCCACCAAC
TCTACGGTGGCAACATGGTTAATGACCTCAGTGGCTCCATCCATTGCGAGGATGGTGGAGACAA
TTTCTAATGCATCAACTGTGTGGAAGACATTGAGCAAAATGTACTCAGGGGAAGACAATGCAAT
GATGATGGTTGAGGCTCAAGACAAGGTGGAGAACTTGAAGCAAGAGGGAAGAACTGTTCAAGAA
TATGCTAGTGAGTTGCAACAATTATGGGCAGATTTGGATCACTATGAGAGGGGGACTGGGAGGA
GGATTGGGACTGGAGTCAGGCGCAATGGGTTGTGGTACATCAATAATGAAGAAGTAGGATTGGC
TGCAGTTGCAGGAAATGCTGAGGAGATTATTTTGCTTCATTGCCGGTTAGGACATCCATCATTT
GATAACGTAAGTAAGCTATATCCAATTCTCTTTAATGGAGTGAACAAAAGTAGACTTGTCTGTG
ACGCTTGCGAATTTGGCAAACATACACGGACCCCATATGTTGGGAGTGGCCTCCGTAGTTATGA
ACCCTTTATATTAATACATTATGATGTTTGGGGACCATGGCCAGTTACTTTAGTGAGTGGATTT
AAGTGGTTTGTTTCCTTCATTGATTGTTACACTCGAATGACTTGGATTTATGTACTTAAGCACA
AGAATGATGTTCTTCGATGCTTCCAAGATTTTCATAAATTCAAATCAGTTTGATGCAAATGTTC
GAATCATTCGAACTGATAATGGGACTGAGTATATCAACAACGAATTTGTCTCTTATGTCTTGGA
TCAAGGGATCATACATCAAACCACTTGTCCTGGAACCCCTCCTCAAAATGGTGTAGCTGAGAGG
AAGAACCGACATTTGTTGGAGGTGGCACGTTCACTTATGTTTCAGATGAATGTACCCAAATACT
TGTGGAAGTGATGACTGCTGCATATCTTATTAATCGCATATCTTGTGGAGATGACAAGGAAGAA
TGATGGGGACCAAATTAGGGAATTTGCACGGGAGCAAGTTGAAGAGTCTGAACAACCTGAGCAT
CCAGTCCAAGAATCCTCCCCGTGCCTCTCTCCTCCAACTCCCTTGCCCCTCATTGAAACGTCTG
GTGATGTTCCCCCTATACTTGAACAAGTAGAATTACCTCTTACACAACGTAGGGAAACTAGAAG
TAATGCTGGGAAACCTCCTATACGTCTTGGCTTTGAACATATTAGCTCTAAGCATGACATTGCA
AATTATATCTCATACTCCCACATTTCACCTGCATACAAAACTTTCATTGCATCATTACAAGCAG
TGCCTGTTCCGAAAGACTGGAGATGTGCCAAGCAAGATCCTAGGTGGAAAGATGCAATGAAGGA
GGAGCTTCATGCCCTTCAGGAGAACAAGACATGGGAACTTGTGAGACTTCCACCAGGAAAAAGA
GCAGTAAGATGTAAGTGAGTATTTACAGTAAAGCAAACTCCTGAAGGGAAGGTGGATAGATACA
AAGCAAGATCAATTGCAAAAGGTTATAGTCAAACTTATGGGATTGACTATGATGAAACATTTGC
TCCTGTGGCCAAGATGGGTATAGTGAGAGCTTTGGTGTCTTCTGCAGTTAACTTTGGATGGCCT
CTACATCAGCTGGATGTGAAAAATGCTTTCCTTTATGGTGATCTACAAGAGGTCTATATGGAGA
TTCCCCTTGGATTTGGAAATAACCAAACGGTAGGAAAGGTATGTAAACTCAAGAGATCATTATA
TGGTTTGAAGCAGTCTCACGTGCATGGTTTGATAGATTTAGGCGTGCACTATGTGAGATGGGAT
ATTCCCAATGCAATGGAGATCACACGGTTTTTTATACACATAAGGGTTCATGTATTACCATCTT
GGCAGTGTATGCTGATGATATAGTGATCACCGGTGATGATGGGGGAAGAAATTAGGTGCTTGAA
GGAAATGTTTGGAAAGACCTTTGAGGTGAAGGATCTTGGACCTCTTCGATACTTCCTTGGGATT
GAGATTGCTCGGTCGTCAAAGGGAATCGTTCTCTCCCAAGGGAAATATATCCTTGATCTATTGG
CAGAAACATGAATGCTTGGATGTCGTTCAAGTGCTACACCAATTGATAAAAATCATCAACTATG
TGCTCAGACAGGTGATCCAGTTGACAAGGAGGCTTGTAGGACGCTTGATATATCTGTGCCATAC
AAGACCTGATATCTCTTATGTAGTGAGTGTGGTAAATAGATATATGCATGATCCTAGGTCTGGT
CTTTTGGAGGCAGCTCATAGAATCCTAAGATACTTGAAGGGATGGCACTATGGTGCTCCATTGT
GATAATAAATCAGTTATCAGCATTGCAAACAATCCGGTTCAGCATGATCACATAAAGCATATCG
AAATTGATAGGTTGTTCATCAAAGAGAAAATTGATAGTGGAGTGCTTAGCCTAGAGTATACTAA
ATCTTGTGAACAACTAGCTGATTGTCTAACAAAGGGATTAGGCCCAAGTGAATGAGTTATTTTG
TAACAAGATGGGCATGATCGATATCTTTTGCCCATCTTGAGGGGGAGTGTTGGTGTAATATGCA
ACTTTATCAGGGACCTGCTTGTAATTCTGTTAAATAAATATATGCATGTGTGGGGGTACTGGTC
AGTGGTGAGGCCAATCATTCCCCAATTCCCAAATCAATCTACACATACCTTTGCAGGAGTCTCT
TCTTCATCAGAACTCTCACCTTCCTTTGCAGGAGTCTCTTTTTCATCAGTACTCTCACCTTCCT
TTGCAGTAGTCTCTTCTTCATCAGAACTCTTACCTTCATAATCAGCATCATCACTTGAATCCTA
TTTGTCAATCATATCATACAAATGTATCGCAGGATTATAATATATCCAACACAATTCATGACTG
CTCATTTTTAATAATGTCACTGTTACGTACCTCATTACCAGTAGATTCACCAACTACTGAAATA
TCACGGTATCGTTCATTGTTGTCATCATCAGCTTTTGATTTCTCATAGTGCTCTATTTCCTTTA
CAAAAGCCTTTTGCATGGCGGATGCAACTGTAGCAGACTTTGCAGGAAGTTTACTTTTCTGTGC
TTCTTTGATCATATTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.222630227
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015