Detail information of Os01g0909500_circ_g.6


General Information
CircRNA Name Os01g0909500_circ_g.6
ID in PlantcircBase osa_circ_005383
Alias NA
Organism Oryza sativa
Position chr1: 39622676-39622904  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0909500
Parent gene annotation Hypothetical conserved gene. (Os01t0909500-02);Similar to cDNA c
lone:J013116D08, full insert sequence. (Os01t0909500-03)
Parent gene strand -
Alternative splicing Os01g0909500_circ_g.1 Os01g0909500_circ_g.2 Os01g0909500_circ_g.3 Os01g0909500_circ_g.4 Os01g0909500_circ_g.5 Os01g0909500_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0909500-03:1
Os01t0909500-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGGAGGAAAGCGTCCCAATCGCAAACTTCTCATCATTAACTTCGACAAATACTTTCACATT
GGAGTCTTTTAGCCCGTAAGCCTCATCAAGGGCTACcttcagaatcagtgaattttcccaaatt
ctttacttgatagccacaaaaggcaactttgctgattagtgaggtgtggaatagttgaaagttc
ttcttgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 229
Transcript exons: 39622676-39622904
CTTCAGAATCAGTGAATTTTCCCAAATTCTTTACTTGATAGCCACAAAAGGCAACTTTGCTGAT
TAGTGAGGTGTGGAATAGTTGAAAGTTCTTCTTGAAACAGAAGTCAACCTTGATATGCGGATGC
CTTTTGGAGGAAAGCGTCCCAATCGCAAACTTCTCATCATTAACTTCGACAAATACTTTCACAT
TGGAGTCTTTTAGCCCGTAAGCCTCATCAAGGGCTAC

Genomic sequence CTTCAGAATCAGTGAATTTTCCCAAATTCTTTACTTGATAGCCACAAAAGGCAACTTTGCTGAT
TAGTGAGGTGTGGAATAGTTGAAAGTTCTTCTTGAAACAGAAGTCAACCTTGATATGCGGATGC
CTTTTGGAGGAAAGCGTCCCAATCGCAAACTTCTCATCATTAACTTCGACAAATACTTTCACAT
TGGAGTCTTTTAGCCCGTAAGCCTCATCAAGGGCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.423523602
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017