Detail information of BGIOSGA016667_circ_g.4


General Information
CircRNA Name BGIOSGA016667_circ_g.4
ID in PlantcircBase osi_circ_014497
Alias Chr04:25150010_25151018(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23100463-23101471  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA016667
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016667-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTGATGTACTCATGCCT
CCTTCAGAATGTTACTACACAGATCTGTTTTTTCAGggtcactttggatgttggggcacacttt
tatgatccgaaggcaataattatccgtctgaatcatagcaaacttgctgaagcagtttgttcct
gggcagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCACTTTGGATGTTGGGGCACACTTTTATGATCCGAAGGCAATAATTATCCGTCTGAATCAT
AGCAAACTTGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAAGAACGGCGACAAAATGTTG
CTGAGGTACAGTACTTTGTCTCACCTGTTCCTCACATTTGTGGAATCATCTCAGCTGATACCTT
TTTTTTCTGTGTGTGTATCAGTTTTTCTCTTCAACTCTTGTTCAGTATTGGCCAAATAAGGCTG
ATCGCAAGTCACAATGGAGTTTGATTCGTGGGCAACTATTACAGGTACAAGCACCACAATACAC
AATCAAACCATGGTGGTACTTTAATAGTTGTTGTTTTATTGATTAATAAAGCATACTGAATACT
ACTACAGTGAAACTCCTGTATGAATAGTTTTTTTTTGGTAAAAACAATATAATGCATCAACGTA
TTACTAATATTGAACAAGTTGGAAAAAATAATTCTGTTAACAATTTGCAAGATGCAAAGTTTTA
TCCTATTTAATTAGGTTCGTTATTATACCTTTTTCCTTGTAAATGCTTGATTTACTGAGATGCA
TTCACAAGATTCCCATGTGAATATTGAAAATGCTTCCATTACTAACAGTTTCCATCTTTCCATG
TAATGGGTTAGTGTATAAAAATATTTATTGAATGCTCAGGATCTTCGTCTTTCGGAAGAGGTGG
TTGAGAAGCTACATAAAGCTGATCAGAGATTTTGTGGTTCTGCAGATCAAGTACTTGCTAGATT
AAGAGGGACCCTGTTCTATGGTAGTGATTAAGCCCCTCTACATTGTCTGCTGTAGTCTGCAAAT
ATGTACTAAAATGTCAATCATTCTATGTTTCTTGTTGCAGATAAATCTGCTTGCAAGGCTCTCG
ATGAGATCTCAGCATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTGA
TGTACTCATGCCTCCTTCAGAATGTTACTACACAGATCTGTTTTTTCAG
Conservation Information
Conserved circRNAs osa_circ_024373 osa_circ_024371
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021