Detail information of Os04g0492600_circ_g.1


General Information
CircRNA Name Os04g0492600_circ_g.1
ID in PlantcircBase osa_circ_024371
Alias NA
Organism Oryza sativa
Position chr4: 24632023-24633029  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os04g0492600
Parent gene annotation Anticodon-binding domain containing protein. (Os04t0492600-01)
Parent gene strand +
Alternative splicing Os04g0492600_circ_g.2 Os04g0492600_circ_g.3
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   CA-AA
Number of exons covered Os04t0492600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTGATGTACTCATG
CCTCCTTCAGAATGTTACTACACAGATCTGTTTTTTcaggtcactttggatgttggggcacact
tttatgatccgaaggcaataattatccgtctgaatcatagcaaacttgctgaagcagtttgttc
ctgggcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGTCACTTTGGATGTTGGGGCACACTTTTATGATCCGAAGGCAATAATTATCCGTCTGAATC
ATAGCAAACTTGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAAGAACGGCGACAAAATGT
TGCTGAGGTACAGTACTTTGTCTCACCTGTTCCTCACATTTGTGGAATCATCTCAGCTGATACC
TTTTTTTTCTGTGTGTGTATCAGTTTTTCTCTTCAACTCTTGTTCAGTATTGGCCAAATAAGGC
TGATCGCAAGTCACAATGGAGTTTGATTCGTGGGCAACTATTACAGGTACAAGCACCACAATAC
ACAATCAAACCATGGTGGTACTTTAATAGTTGTTGTTTTATTGATTAATAAAGCATACTGAATA
CTACTACAGTGAAACTCCTGTATGAATAGTTTTTTTTGGTAAAAACAATATAATGCATCAACGT
ATTACTAATATTGAACAAGTTGGAAAAAATAATTCTGTTAACAATTTGCAAGATGCAAAGTTTT
ATCCTATTTAATTAGGTTCGTTATTATACCTTTTCCCTTGTAAATGCTTGATTTACTGAGATGC
ATTCACAAGATTCCCATGTGAATATTGAAAATGCTTCCATTACTAACAGTTTCCATCTTTCCAT
GTAATGGGTTAGTGTATAAAAATATTTATTGAATGCTCAGGATCTTCGTCTTTCGGAAGAGGTG
GTTGAGAAGCTACATAAAGCTGATCAGAGATTTTGTGGTTCTGCAGATCAAGTACTTGCTAGAT
TAAGAGGGACCCTGTTCTATGGTAGTGATTAAGCCCCTCTACATTGTCTGCTGTAGTCTGCAAA
TATGTACTAAAATGTCAATCATTCTATGTTTCTTGTTGCAGATAAATCTGCTTGCAAGGCTCTC
GATGAGATCTCAGCATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTG
ATGTACTCATGCCTCCTTCAGAATGTTACTACACAGATCTGTTTTTT
Conservation Information
Conserved circRNAs osi_circ_014497
PMCS 0.166666468
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017