Detail information of Os03g0701800_circ_g.2


General Information
CircRNA Name Os03g0701800_circ_g.2
ID in PlantcircBase osa_circ_021137
Alias Os03circ23448/Os_ciR792
Organism Oryza sativa
Position chr3: 28183133-28184895  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os03g0701800
Parent gene annotation Similar to Phosphatidylinositol-4-phosphate 5-kinase 1. (Os03t07
01800-01);Similar to Isoform 2 of Phosphatidylinositol-4-phospha
te 5-kinase 1. (Os03t0701800-02)
Parent gene strand +
Alternative splicing Os03g0701800_circ_g.1 Os03g0701800_circ_g.3 Os03g0701800_circ_g.4
Support reads 2/33/7
Tissues leaf and panicle/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0701800-02:4
Os03t0701800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTA
TGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgaatcttcgagaaatgtttcatatcgat
gctgcagattacatgatgtctatatgtggtggtgatagtctaaaggagctttcttcacctggga
aaagtggc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 132
Transcript exons: 28183133-28183205,28184837-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTG
GAAG

Transcript length: 159
Transcript exons: 28183133-28183162,28184767-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCGGGATTTCTACTAGTTGCTGCTGATGAGCCAGGT
CCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATGAAG
AAGTTGATCTTGTTTTGCCAGGCACTGGAAG

Transcript length: 191
Transcript exons: 28183133-28183221,28184794-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTTCTTCACCTGGCCAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAG
CATGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG

Transcript length: 212
Transcript exons: 28183133-28183208,28184760-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTCAAAGGGATTTCTACTAGTTGCTGCTGATGAGCCAGGTCCAGCAGTACG
TGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAGTTGATCTT
GTTTTGCCAGGCACTGGAAG

Transcript length: 220
Transcript exons: 28183133-28183217,28184761-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTTCTTCATTCAAAGGGATTTCTACTAGTTGCTGCTGATGAGCCAGGTCCA
GCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATGAAGAAG
TTGATCTTGTTTTGCCAGGCACTGGAAG

Transcript length: 232
Transcript exons: 28183133-28183232,28184764-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGCAAAGGGATTTCTACTAGTTGCTGCTGAT
GAGCCAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTG
GTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG

Transcript length: 816
Transcript exons: 28183133-28183298,28183448-28183585,28183673-28183853,28
184371-28184532,28184727-28184895
GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGCAGCATTTTCTATCTTTCTCAAGATGAAC
GTTTTGTTATAAAAACATTGAGGAAAACTGAGCTGAAGATTGGTTTGATGTAATACGTGCTGCA
GATACTATTGAAGATGCTTCCAAAGTATTACAATCATGTCAAAGCTTATGATAATACGCTCATT
ACAAAATTCTTTGGCGTGCACAGGATTACTCTGAAACCTGGAAGAAAGGTCCGTTTTGTTGTCA
TGGGAAATATGTTTTGTACTGAACTGCGAATTCATCGTAAGTATGACTTAAAGGGCTCTACACA
AGGCCGATCAACAAAGAAGCAAAATATAAATGAGAACACAACACTAAAGGACCTTGACCTATCA
TATGTTTTTCACGTGGATAAACCATGGAGGGAGGCACTTTTCAGGCAGATAGCTCTTGATTGTA
TGTTCCTGGAATCCCAATCTATAATTGACTATAGCATGCTATTGGGAATCCATTTCCGAGCTCC
CAATCACCTGAAGCGTATCACATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAA
ACGGAATGTAGTGTTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACTAGTTG
CTGCTGATGAGCCAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGC
AGAAGGTGGTTATGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG

Genomic sequence GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGCAGCATTTTCTATCTTTCTCAAGATGAAC
GTTTTGTTATAAAAACATTGAGGAAAACTGAGCTGAAGGTATGACCCACCCTCAATTTTTTTCT
TGCAATAACAATAGTGTTATTTGTTAATTAAAAATGACTAAAACTGAGCTTTACAAGAACAACA
AAGATTTGTGCTAAAAACCGTGTATATCCTTGTTAAGTGATAAGATATGCCTACTGCAGATTGG
TTTGATGTAATACGTGCTGCAGATACTATTGAAGATGCTTCCAAAGTATTACAATCATGTCAAA
GCTTATGATAATACGCTCATTACAAAATTCTTTGGCGTGCACAGGATTACTCTGAAACCTGGAA
GAAAGGTACATTATCATATCATACTGTTGTGTTGAATGTTGTTGTCTATTTGTACACATTTGCT
ATATTAATTCTATGTATGGTGTTAATAGGTCCGTTTTGTTGTCATGGGAAATATGTTTTGTACT
GAACTGCGAATTCATCGTAAGTATGACTTAAAGGGCTCTACACAAGGCCGATCAACAAAGAAGC
AAAATATAAATGAGAACACAACACTAAAGGACCTTGACCTATCATATGTTTTTCACGTGGATAA
ACCATGGAGGGAGGCACTTTTCAGGCAAATTGCTACTTTCTTGCTCCTCTTTTTTCTGAACATC
TTACTGTCGTCTTTCATGGTTTTGTCTATATTGGCTTGAAGTCCAGGTTCCATAACTTACCGTT
TATGATGTTACTTCTGGAGATTGTGTTCACTGGGTAGTCCCTTCTGGAAAATTAAAAAGAACAG
TAGATTTAAATGACTTGTGCAGATTCCTGCTTCAGTCCCATGATTGGTGGACATCAAAATTATT
TTCTACTATTTTGATATTGATTCTTATCCTATTCTTGAGATCTGAAGAATACTTAAGATGGACA
ATTTTTATTTATACTATAGCAATAAATAGATTTTTTTAAATATAAACAACTAGATTAAAGAGGC
AAACCAGATTTTAAGCAGTGTCCGACCATGCATACAAGAGATTGAATTCCAGCTGTCTAGTTCA
GTTTTGCATATTACTGCTCCATTTCTGCTGTGCTATTTTTCTTAACATGGTTGACGATGATATC
TTGAGAGCCAACAGTTGTACTATTTTCAGGCAGATAGCTCTTGATTGTATGTTCCTGGAATCCC
AATCTATAATTGACTATAGCATGCTATTGGGAATCCATTTCCGAGCTCCCAATCACCTGAAGCG
TATCACATCATGTCAGAACGCTCTTGAAAGTACTGGAATTTCAGCTGAAACGGAATGTACGTAC
TAAACCTTAAGTACATCTGAGTTCTCTTTATTATATTCCTCTGAAAATTTGTCCTTTTACTAAA
TCTGAAGTCAGGACTACACCAGATTCTTTATATCATTACATCAACCAATTGCCTATCTTCAGCT
TTTGACTTCCATTTGTTGCCTAATGGTAATATCTTAGTCTTTTTTTCACCTTAATCAGGTAGTG
TTGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACTAGTTGCTGCTGATGAGCC
AGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTAT
GAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG
Conservation Information
Conserved circRNAs osi_circ_005042* osi_circ_013468
PMCS 0.445897882
Functional Information
Coding potential Y
Potential coding position 28183488-28183459(+)
28184860-28183173(+)
28183156-28184779(-)
Potential amino acid sequence MLPKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGSTQGRST
KKQNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRAPNHLK
RITSCQNALESTGISAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRAAEGGY
EEVDLVLPGTGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKT
ELKIGLM*(+)
MKKLILFCQALEGIFEKCFISMLQIT*(+)
MKHFSKIPSSAWQNKINFFITTFCCPNHASSYVRTTYCWTWLISSN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA