Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA013400_circ_g.3 |
ID in PlantcircBase | osi_circ_005042 |
Alias | 3:32326938|32328699 |
Organism | Oryza sativa ssp. indica |
Position | chr3: 32326938-32328699 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA013400 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA013400_circ_g.2 BGIOSGA013400_circ_g.4 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA013400-TA:5 |
Conservation Information | |
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Conserved circRNAs | osa_circ_021137* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
32326961-32328583(-) 32326952-32328696(+) 32328664-32326978(+) |
Potential amino acid sequence |
MKHFSKIPSSAWQNKINFFITTFCCPNHASSYVRTTYCWTWLISSN*(-) MFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTELKILLKMLPKYYNHV KAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGSTQGRSTKKQNINENT TLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRAPNHLKSITSCQNAL ETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRAAEGGYEEVDLVLPG TGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTELKILLKML PKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGSTQGRSTKK QNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRAPNHLKSI TSCQNALETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRAAEGGYEE VDLVLPGTGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTEL KILLKMLPKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGST QGRSTKKQNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRA PNHLKSITSCQNALETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRA AEGGYEEVDLVLPGTGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIK TLRKTELKILLKMLPKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRK YDLKGSTQGRSTKKQNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSML LGIHFRAPNHLKSITSCQNALETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHI RGSMVRAAEGGYEEVDLVLPGTG(+) MKKLILFCQALEGIFEKCFISMLQIT*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |