Detail information of BGIOSGA013400_circ_g.3


General Information
CircRNA Name BGIOSGA013400_circ_g.3
ID in PlantcircBase osi_circ_005042
Alias 3:32326938|32328699
Organism Oryza sativa ssp. indica
Position chr3: 32326938-32328699  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013400
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013400_circ_g.2 BGIOSGA013400_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013400-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTA
TGAAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAGgaatcttcgagaaatgtttcatatcgat
gctgcagattacatgatgtctatatgtggtggtgatagtctaaaggagctttcttcacctggga
aaagtggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGAT
AGTCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGCAGCATTTTCTATCTTTCTCAAGATGAAC
GTTTTGTTATAAAAACATTGAGGAAAACTGAGCTGAAGGTATGACCCACCCTCAGTTTTTTTCT
TGCAATAACAATAGTGTTATTTGTTAATTAAAAATGACTAAAACTGAGCTTTACAAGAACAACA
AAGATTTGTGCTAAAAACCGTGTATATCCTTGTTAAGTGATAAGATATGCCTACTGCAGATTGG
TTTGATGTAATACGTGCTGCAGATACTATTGAAGATGCTTCCAAAGTATTACAATCATGTCAAA
GCTTATGATAATACACTCATTACAAAATTCTTTGGCGTGCACAGGATTACTCTGAAACCTGGAA
GAAAGGTACATTATCATATCATACTGTTGTGTTGAATGTTGTTGTCTATTTGTACACATTTGCT
ATATTAATTCTATGTATGGTGTTAATAGGTCCGTTTTGTTGTCATGGGAAATATGTTTTGTACT
GAACTGCGAATTCATCGTAAGTATGACTTAAAGGGCTCTACACAAGGCCGATCAACAAAGAAGC
AAAATATAAATGAGAACACAACACTAAAGGACCTTGACCTATCATATGTTTTTCACGTGGATAA
ACCATGGAGGGAGGCACTTTTCAGGCAAATTGCTACTTTCTTGCTCCTCTTTTTTCTGAACATC
TTACTGTCGTCTTTCATGGTTTTGTCTATATTGGCTTGAAGTCCAGGTTCCATAACTTACCGTT
TATGATGTTACTTCTGGAGATTGTGTTCACTGGGTAGTCCCTTCTGGAAAATTAAAAAGAACAG
TAGATTTAAATGACTTGTGCAGATTCCTGCTTCAGTCCCATGATTGGTGGACATCAAAATTATT
TTCTACTATTTTGATATTGATTCTTATCCTATTCTTGAGATCTGAAGAATACTTAAGATGGACA
ATTTTTATTTATACTATAGCAATAAATAGATTTTTTTAAATATAAACAACTAGATTAAAGAGGC
AAACCATATTTTAAGCAGTGTCCGACCATGCATACAAGAGATTGAATTCCAGCTGTCTAGTTCA
GTTTTGCATATTACTGCTCCATTTCTGCTGTGCTATTTTTCTTAACATGGTTGACGATGATATC
TTGAGAGCCAACAGTTGTACTATTTTCAGGCAGATAGCTCTTGATTGTATGTTCCTGGAATCCC
AATCTATAATTGACTATAGCATGCTATTGGGAATCCATTTCCGAGCTCCCAATCACCTGAAGAG
TATCACATCATGTCAGAACGCTCTTGAAACTACTGGAATGTCAGCTGAAACGGAATGTACGTAT
AAACCTTAAGTACATCTGAGTTCTCTTTATTATATTCCTCTGAAAATTTGTCCTTTTACTAAAT
CTGAAGTCAGGACTACACCAGATTCTTTATATCATTACATCAACCAATTGCCTATCTTCAGCTT
TTGACTTCCATTTGTTGCCTAATGGTAATATCTTAGTCTTTTTTTCACCTTAATCAGGTAGTGT
TGCACTGCATCATGAGGAGACAATTTCTTCAAAGGGATTTCTACTAGTTGCTGCTGATGAGCCA
GGTCCAGCAGTACGTGGTTCGCACATAAGAGGAAGCATGGTTAGGGCAGCAGAAGGTGGTTATG
AAGAAGTTGATCTTGTTTTGCCAGGCACTGGAAG
Conservation Information
Conserved circRNAs osa_circ_021137*
PMCS
Functional Information
Coding potential Y
Potential coding position 32326961-32328583(-)
32326952-32328696(+)
32328664-32326978(+)
Potential amino acid sequence MKHFSKIPSSAWQNKINFFITTFCCPNHASSYVRTTYCWTWLISSN*(-)
MFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTELKILLKMLPKYYNHV
KAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGSTQGRSTKKQNINENT
TLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRAPNHLKSITSCQNAL
ETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRAAEGGYEEVDLVLPG
TGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTELKILLKML
PKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGSTQGRSTKK
QNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRAPNHLKSI
TSCQNALETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRAAEGGYEE
VDLVLPGTGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIKTLRKTEL
KILLKMLPKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRKYDLKGST
QGRSTKKQNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSMLLGIHFRA
PNHLKSITSCQNALETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHIRGSMVRA
AEGGYEEVDLVLPGTGRNLREMFHIDAADYMMSICGGDSLKELSSPGKSGSIFYLSQDERFVIK
TLRKTELKILLKMLPKYYNHVKAYDNTLITKFFGVHRITLKPGRKVRFVVMGNMFCTELRIHRK
YDLKGSTQGRSTKKQNINENTTLKDLDLSYVFHVDKPWREALFRQIALDCMFLESQSIIDYSML
LGIHFRAPNHLKSITSCQNALETTGMSAETECSVALHHEETISSKGFLLVAADEPGPAVRGSHI
RGSMVRAAEGGYEEVDLVLPGTG(+)
MKKLILFCQALEGIFEKCFISMLQIT*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021