Plant Circular RNA Database

Detail information of Os02g0751100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0751100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_016585
					
						Alias
						Os_ciR8100
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 31567127-31568919  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0751100						
					
						Parent gene annotation
						
							Peptidase A1 domain containing protein. (Os02t0751100-01);Hypoth
etical conserved gene. (Os02t0751100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0751100_circ_g.1 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0751100-01:5

General Information
CircRNA Name	Os02g0751100_circ_g.2
ID in PlantcircBase	osa_circ_016585
Alias	Os_ciR8100
Organism	Oryza sativa
Position	chr2: 31567127-31568919 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os02g0751100
Parent gene annotation	Peptidase A1 domain containing protein. (Os02t0751100-01);Hypoth etical conserved gene. (Os02t0751100-02)
Parent gene strand	+
Alternative splicing	Os02g0751100_circ_g.1
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0751100-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCCTCTTGAGATGCCTGATGTTCCAACTATAACTCTGACTTTTGCTGAGAACAAGAGTTTCCAG
GCTGTTAATCCTATACTTCCATTTAATGACAGACAGgatagagatcttgggatttacaagccat
ctgaatcaactacaagtcggcatctgccctgtagccatgagctttgctcaccggcttcaggttg
cacaaacc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 771
Transcript exons: 31567127-31567359,31567988-31568215,31568380-31568518,31
568598-31568668,31568820-31568919
GATAGAGATCTTGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCCCTGTAGCC
ATGAGCTTTGCTCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATACAATATTGA
CTACTTTTCAGAAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACTTGGATTCT
AGGGAGGGCCATGCACCTGTGAATGCTTCTGTCATTATAGGCTGTGGTAAAAAGCAGAGTGGTA
GCTATTTGGAAGGTATTGCACCAGATGGACTTCTTGGTCTTGGAATGGCAGATATCTCAGTACC
TAGTTTCCTTGCAAGAGCTGGATTAGTACGAAATTCCTTTTCAATGTGTTTCAAGAAAGATGAT
TCTGGGAGAATTTTCTTTGGTGATCAAGGAGTACCTACCCAACAGTCTACACCATTTGTCCCGA
TGAATGGCAAGCTTCAGACTTATGCTGTTAATGTTGACAAATATTGTATTGGACATAAGTGTAC
GGAGGGAGCTGGCTTCCAGGCATTAGTAGACACTGGAACATCCTTCACCAGTCTTCCCCTCGAT
GCCTACAAGAGTATCACTATGGAGTTCGACAAACAAATCAATGCATCAAGAGCATCTTCTGATG
ATTATTCTTTCGAATATTGCTACAGCACCGGTCCTCTTGAGATGCCTGATGTTCCAACTATAAC
TCTGACTTTTGCTGAGAACAAGAGTTTCCAGGCTGTTAATCCTATACTTCCATTTAATGACAGA
CAG
						
					

						Genomic sequence
						
							GATAGAGATCTTGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCCCTGTAGCC
ATGAGCTTTGCTCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATACAATATTGA
CTACTTTTCAGAAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACTTGGATTCT
AGGGAGGGCCATGCACCTGTGAATGCTTCTGTCATTATAGGGTATGCTTCTTTGTCTTCTGCCC
TTTTTTTTAACATTAACTATTGCTGGAGCAATAATAATTATCAGATTGCTTATTTCCTACTAGG
GCATTCTAATTGAACAACAATACAATCACCTGCGCGCATGGCCGCATGTTTACTTGTACATTTA
CTGATATGTCAGGTAGCAGCATGCATCTGCATATAGAATGAAATAATTCCATTTTTAAACCCCT
AAACTTTGCCGAATGTTCAATTGACACTCAACTATAAAATCATTTAACCCTAAAGTTAGAAAGC
AAGGTGAGCTTACTCCCTAAGGTGGTCTCAGTGGGTGCTTTTGACATTGCTGTTAACATGGAAA
ATAACTCTACTGATCCACCTTCCAAAAGAACCATGCTTGCCTTAGGCCTTGTGTACATAGGTGG
CGGTTAGGCCCTATCCTTTCCGTCTTTAAACTAGAAGTGTTAATTACCTTTATAATATTATCTC
GTGGCATTATCGATACAACAAGTCATGAATGTACTCCTAGAACAAAAATGATACAAACTAGATG
TTGTGCTCTAGTATGAAACACCTCTAGTTTAATGATTAGTTTGCTTAATGAAATTTACAACTTC
ATTAACATAGTGTGTATCCCTGTGTACAGCTGTGGTAAAAAGCAGAGTGGTAGCTATTTGGAAG
GTATTGCACCAGATGGACTTCTTGGTCTTGGAATGGCAGATATCTCAGTACCTAGTTTCCTTGC
AAGAGCTGGATTAGTACGAAATTCCTTTTCAATGTGTTTCAAGAAAGATGATTCTGGGAGAATT
TTCTTTGGTGATCAAGGAGTACCTACCCAACAGTCTACACCATTTGTCCCGATGAATGGCAAGC
TGTGAGTACCCCACAGGAATAGATATGTGTAGCAATACCATTAGTTTCTATTCTCTATTTTATG
TTATCCATTTTGGGGGGGTCAAGCCATGTCCACTTTATATTGGAAGCAATGGATGTACTTCTTG
ACAGTTCCACTCACATGCTTTCTCCTTTTTTTTTCAGTCAGACTTATGCTGTTAATGTTGACAA
ATATTGTATTGGACATAAGTGTACGGAGGGAGCTGGCTTCCAGGCATTAGTAGACACTGGAACA
TCCTTCACCAGTCTTCCCCTCGATGCCTACAAGAGTATCACTATGGAGGTAAATATCTACTCCT
TCGGAGGAATTCTTTTGGTGGATATCGCCTGTGCTTATTTATCATGAATTCATGATTCTGCAGT
TCGACAAACAAATCAATGCATCAAGAGCATCTTCTGATGATTATTCTTTCGAATATTGCTACAG
CACCGGGTAATTTTATTTTGAAATAATTGCTTCTGTTCCATTTTTGTGAGTAATATCAGACAAG
CTAACCTAGCCCAAAAACAAAAAATCAAACAAGTTAAGATGGTGCAACCACTTAGTTTCTGCCA
CTTCTGATTTTATGAGTTGTTTGTTGCAGTCCTCTTGAGATGCCTGATGTTCCAACTATAACTC
TGACTTTTGCTGAGAACAAGAGTTTCCAGGCTGTTAATCCTATACTTCCATTTAATGACAGACA
G
						
					

			
		

Sequences
Splice junction sequence	TCCTCTTGAGATGCCTGATGTTCCAACTATAACTCTGACTTTTGCTGAGAACAAGAGTTTCCAG GCTGTTAATCCTATACTTCCATTTAATGACAGACAGgatagagatcttgggatttacaagccat ctgaatcaactacaagtcggcatctgccctgtagccatgagctttgctcaccggcttcaggttg cacaaacc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 771 Transcript exons: 31567127-31567359,31567988-31568215,31568380-31568518,31 568598-31568668,31568820-31568919 GATAGAGATCTTGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCCCTGTAGCC ATGAGCTTTGCTCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATACAATATTGA CTACTTTTCAGAAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACTTGGATTCT AGGGAGGGCCATGCACCTGTGAATGCTTCTGTCATTATAGGCTGTGGTAAAAAGCAGAGTGGTA GCTATTTGGAAGGTATTGCACCAGATGGACTTCTTGGTCTTGGAATGGCAGATATCTCAGTACC TAGTTTCCTTGCAAGAGCTGGATTAGTACGAAATTCCTTTTCAATGTGTTTCAAGAAAGATGAT TCTGGGAGAATTTTCTTTGGTGATCAAGGAGTACCTACCCAACAGTCTACACCATTTGTCCCGA TGAATGGCAAGCTTCAGACTTATGCTGTTAATGTTGACAAATATTGTATTGGACATAAGTGTAC GGAGGGAGCTGGCTTCCAGGCATTAGTAGACACTGGAACATCCTTCACCAGTCTTCCCCTCGAT GCCTACAAGAGTATCACTATGGAGTTCGACAAACAAATCAATGCATCAAGAGCATCTTCTGATG ATTATTCTTTCGAATATTGCTACAGCACCGGTCCTCTTGAGATGCCTGATGTTCCAACTATAAC TCTGACTTTTGCTGAGAACAAGAGTTTCCAGGCTGTTAATCCTATACTTCCATTTAATGACAGA CAG
Genomic sequence	GATAGAGATCTTGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCCCTGTAGCC ATGAGCTTTGCTCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATACAATATTGA CTACTTTTCAGAAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACTTGGATTCT AGGGAGGGCCATGCACCTGTGAATGCTTCTGTCATTATAGGGTATGCTTCTTTGTCTTCTGCCC TTTTTTTTAACATTAACTATTGCTGGAGCAATAATAATTATCAGATTGCTTATTTCCTACTAGG GCATTCTAATTGAACAACAATACAATCACCTGCGCGCATGGCCGCATGTTTACTTGTACATTTA CTGATATGTCAGGTAGCAGCATGCATCTGCATATAGAATGAAATAATTCCATTTTTAAACCCCT AAACTTTGCCGAATGTTCAATTGACACTCAACTATAAAATCATTTAACCCTAAAGTTAGAAAGC AAGGTGAGCTTACTCCCTAAGGTGGTCTCAGTGGGTGCTTTTGACATTGCTGTTAACATGGAAA ATAACTCTACTGATCCACCTTCCAAAAGAACCATGCTTGCCTTAGGCCTTGTGTACATAGGTGG CGGTTAGGCCCTATCCTTTCCGTCTTTAAACTAGAAGTGTTAATTACCTTTATAATATTATCTC GTGGCATTATCGATACAACAAGTCATGAATGTACTCCTAGAACAAAAATGATACAAACTAGATG TTGTGCTCTAGTATGAAACACCTCTAGTTTAATGATTAGTTTGCTTAATGAAATTTACAACTTC ATTAACATAGTGTGTATCCCTGTGTACAGCTGTGGTAAAAAGCAGAGTGGTAGCTATTTGGAAG GTATTGCACCAGATGGACTTCTTGGTCTTGGAATGGCAGATATCTCAGTACCTAGTTTCCTTGC AAGAGCTGGATTAGTACGAAATTCCTTTTCAATGTGTTTCAAGAAAGATGATTCTGGGAGAATT TTCTTTGGTGATCAAGGAGTACCTACCCAACAGTCTACACCATTTGTCCCGATGAATGGCAAGC TGTGAGTACCCCACAGGAATAGATATGTGTAGCAATACCATTAGTTTCTATTCTCTATTTTATG TTATCCATTTTGGGGGGGTCAAGCCATGTCCACTTTATATTGGAAGCAATGGATGTACTTCTTG ACAGTTCCACTCACATGCTTTCTCCTTTTTTTTTCAGTCAGACTTATGCTGTTAATGTTGACAA ATATTGTATTGGACATAAGTGTACGGAGGGAGCTGGCTTCCAGGCATTAGTAGACACTGGAACA TCCTTCACCAGTCTTCCCCTCGATGCCTACAAGAGTATCACTATGGAGGTAAATATCTACTCCT TCGGAGGAATTCTTTTGGTGGATATCGCCTGTGCTTATTTATCATGAATTCATGATTCTGCAGT TCGACAAACAAATCAATGCATCAAGAGCATCTTCTGATGATTATTCTTTCGAATATTGCTACAG CACCGGGTAATTTTATTTTGAAATAATTGCTTCTGTTCCATTTTTGTGAGTAATATCAGACAAG CTAACCTAGCCCAAAAACAAAAAATCAAACAAGTTAAGATGGTGCAACCACTTAGTTTCTGCCA CTTCTGATTTTATGAGTTGTTTGTTGCAGTCCTCTTGAGATGCCTGATGTTCCAACTATAACTC TGACTTTTGCTGAGAACAAGAGTTTCCAGGCTGTTAATCCTATACTTCCATTTAATGACAGACA G

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.225664715

Conservation Information
Conserved circRNAs	NA
PMCS	0.225664715

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							31567302-31568916(+)
31568910-31567289(+)
						
						Potential amino acid sequence
						
							MLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSFSM
CFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTGTSF
TSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAVNPI
LPFNDRQDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTSSGLLIE
DMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSFS
MCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTGTS
FTSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAVNP
ILPFNDRQDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTSSGLLI
EDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSF
SMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTGT
SFTSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAVN
PILPFNDRQDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTSSGLL
IEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNS
FSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTG
TSFTSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAV
NPILPFNDRQ(+)
MTDRIEILGFTSHLNQLQVGICPVAMSFAHRLQVAQTRSSLVHTILTTFQKIQPAPVC*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	31567302-31568916(+) 31568910-31567289(+)
Potential amino acid sequence	MLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSFSM CFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTGTSF TSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAVNPI LPFNDRQDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTSSGLLIE DMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSFS MCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTGTS FTSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAVNP ILPFNDRQDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTSSGLLI EDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSF SMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTGT SFTSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAVN PILPFNDRQDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTSSGLL IEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNS FSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLQTYAVNVDKYCIGHKCTEGAGFQALVDTG TSFTSLPLDAYKSITMEFDKQINASRASSDDYSFEYCYSTGPLEMPDVPTITLTFAENKSFQAV NPILPFNDRQ(+) MTDRIEILGFTSHLNQLQVGICPVAMSFAHRLQVAQTRSSLVHTILTTFQKIQPAPVC*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0751100_circ_g.2

Address

Any questions?

Supported by