Plant Circular RNA Database

Detail information of Os02g0751100_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0751100_circ_g.1
					
						ID in PlantcircBase
						osa_circ_016584
					
						Alias
						Os_ciR4667
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 31565602-31568215  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0751100						
					
						Parent gene annotation
						
							Peptidase A1 domain containing protein. (Os02t0751100-01);Hypoth
etical conserved gene. (Os02t0751100-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0751100_circ_g.2 						
					
						Support reads
						4/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0751100-01:3

General Information
CircRNA Name	Os02g0751100_circ_g.1
ID in PlantcircBase	osa_circ_016584
Alias	Os_ciR4667
Organism	Oryza sativa
Position	chr2: 31565602-31568215 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0751100
Parent gene annotation	Peptidase A1 domain containing protein. (Os02t0751100-01);Hypoth etical conserved gene. (Os02t0751100-02)
Parent gene strand	+
Alternative splicing	Os02g0751100_circ_g.2
Support reads	4/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0751100-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAATGTGTTTCAAGAAAGATGATTCTGGGAGAATTTTCTTTGGTGATCAAGGAGTACCTACCCA
ACAGTCTACACCATTTGTCCCGATGAATGGCAAGCTgttatactacacttgggtggacgttggg
acgccaaatacttccttcctggtcgcattggatactggaagtgacttgttttgggtgccttgtg
attgtatc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 597
Transcript exons: 31565602-31565737,31567127-31567359,31567988-31568215
GTTATACTACACTTGGGTGGACGTTGGGACGCCAAATACTTCCTTCCTGGTCGCATTGGATACT
GGAAGTGACTTGTTTTGGGTGCCTTGTGATTGTATCCAATGTGCGCCATTGTCCAGCTACCATG
GAAGTTTGGATAGAGATCTTGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCC
CTGTAGCCATGAGCTTTGCTCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATAC
AATATTGACTACTTTTCAGAAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACT
TGGATTCTAGGGAGGGCCATGCACCTGTGAATGCTTCTGTCATTATAGGCTGTGGTAAAAAGCA
GAGTGGTAGCTATTTGGAAGGTATTGCACCAGATGGACTTCTTGGTCTTGGAATGGCAGATATC
TCAGTACCTAGTTTCCTTGCAAGAGCTGGATTAGTACGAAATTCCTTTTCAATGTGTTTCAAGA
AAGATGATTCTGGGAGAATTTTCTTTGGTGATCAAGGAGTACCTACCCAACAGTCTACACCATT
TGTCCCGATGAATGGCAAGCT
						
					

						Genomic sequence
						
							GTTATACTACACTTGGGTGGACGTTGGGACGCCAAATACTTCCTTCCTGGTCGCATTGGATACT
GGAAGTGACTTGTTTTGGGTGCCTTGTGATTGTATCCAATGTGCGCCATTGTCCAGCTACCATG
GAAGTTTGGTATGCATCTCTTTGTGATCAGTAACGTCATGTTAAGGATATACCGATGCTCTATA
TGGGGATGTTCGTGGCAATGTTAACAGATTATCAAATTTGTTTCCTAAGAAATTATTTCTTCGC
GGAGGGTCTGTTTAGATTGGTGTCATTTTAAACCATACCATTATTCGGTAAAATTAACAATCAT
ATGTCTGCATTTAGTTTTCTACCAAACATTGGTAATATCTAGAGAATTTTGGCAATATCACATT
TAATCCATATAAAAAACTTGGCAATGTTGTCAACTTGCTAAAATTTTGGTATTGTCAAATTTTA
GAATGGTTTATTTTGGCAGCAAGCTGAACATGCCTGGAATATACACCACAGGTCTATGAAGTCT
TAATAAGTAAAACATGCAATCATTACATGAATTTGAACAAGCAATTCAGTAGCATATATGTTTC
GCTATTACTTTTATTGATTCTTGTAATTATTCTGCCAGACCTGTGAACATGCAAATTATATTAC
TTAGCTCAATTTCACTCTTAATTTATCTAAATTTGCTGATGTTGGAAATATAAGTACAAATCTA
ATGCTGATCATAAATTATTGAACATTTCAATAGATCAGTCTAGTAGGTTAGGTACCCACTAAAT
AGAGACTAGGTGGCAACTAGGTGGGTCTAAGTGGTGACTAGACTGGGGGATGTTGCTGGCGACT
AGCCGTTAGTTGCAGCCTAGGCAGCCGTCCTGGTGAACTCTGCAATAAATACAATGCAAATAAG
TTTCAGACCAAGATGCAGTAGCTGTTTTGGCACTCTCAGGTCAGGTAAAACTAATTTTCCCCAT
ATTGTCCACTCAGATGATAAAAAACAATTTAGACTGCAATTTTTAGCTAAGAGGCAAGTTTAGG
GAATACTCCCTCCATCCACAAAAGTTAGACATATTTCACATTTGAGCTTTTCCAAATAAGTTGT
TCCTATTTGTAGTCTTTATGCATCCAAGACTTAAATGAATAGATAAATTAAATGTTTGATTAGA
ACCCAAAGAGTTATCTAAATACTCATTGGTTGCATGCTTGCATTCACTCCTTGATTTTGTAACA
TGCAAGGTGATTTAATTTCTCCTTGGTCTTGATGACAAAAGTAATATGTGTAACTTTTGTGGAT
GGAGGGAGTAACACTTAGTTACGGGATTGCAGGTCTACGAAGTTGATCTTCAAGTTTAGGAACC
CAAATGGCAGTTTGTTAGAGGTTACTTAGTTTGTTAATTCTAAATTTCTTATGATGCTAAGTAG
TATATATGAAGCACACAAACAAGAGGAATTTGTTTTATATTTTAAAGCAGGTTTAGCACTTATT
TGGAATAATTGATTGGCAGGTGCTCCGTCATATGTGGAGCATCTATTATGCAGGATAGAGATCT
TGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCCCTGTAGCCATGAGCTTTGC
TCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATACAATATTGACTACTTTTCAG
AAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACTTGGATTCTAGGGAGGGCCA
TGCACCTGTGAATGCTTCTGTCATTATAGGGTATGCTTCTTTGTCTTCTGCCCTTTTTTTTAAC
ATTAACTATTGCTGGAGCAATAATAATTATCAGATTGCTTATTTCCTACTAGGGCATTCTAATT
GAACAACAATACAATCACCTGCGCGCATGGCCGCATGTTTACTTGTACATTTACTGATATGTCA
GGTAGCAGCATGCATCTGCATATAGAATGAAATAATTCCATTTTTAAACCCCTAAACTTTGCCG
AATGTTCAATTGACACTCAACTATAAAATCATTTAACCCTAAAGTTAGAAAGCAAGGTGAGCTT
ACTCCCTAAGGTGGTCTCAGTGGGTGCTTTTGACATTGCTGTTAACATGGAAAATAACTCTACT
GATCCACCTTCCAAAAGAACCATGCTTGCCTTAGGCCTTGTGTACATAGGTGGCGGTTAGGCCC
TATCCTTTCCGTCTTTAAACTAGAAGTGTTAATTACCTTTATAATATTATCTCGTGGCATTATC
GATACAACAAGTCATGAATGTACTCCTAGAACAAAAATGATACAAACTAGATGTTGTGCTCTAG
TATGAAACACCTCTAGTTTAATGATTAGTTTGCTTAATGAAATTTACAACTTCATTAACATAGT
GTGTATCCCTGTGTACAGCTGTGGTAAAAAGCAGAGTGGTAGCTATTTGGAAGGTATTGCACCA
GATGGACTTCTTGGTCTTGGAATGGCAGATATCTCAGTACCTAGTTTCCTTGCAAGAGCTGGAT
TAGTACGAAATTCCTTTTCAATGTGTTTCAAGAAAGATGATTCTGGGAGAATTTTCTTTGGTGA
TCAAGGAGTACCTACCCAACAGTCTACACCATTTGTCCCGATGAATGGCAAGCT
						
					

			
		

Sequences
Splice junction sequence	CAATGTGTTTCAAGAAAGATGATTCTGGGAGAATTTTCTTTGGTGATCAAGGAGTACCTACCCA ACAGTCTACACCATTTGTCCCGATGAATGGCAAGCTgttatactacacttgggtggacgttggg acgccaaatacttccttcctggtcgcattggatactggaagtgacttgttttgggtgccttgtg attgtatc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 597 Transcript exons: 31565602-31565737,31567127-31567359,31567988-31568215 GTTATACTACACTTGGGTGGACGTTGGGACGCCAAATACTTCCTTCCTGGTCGCATTGGATACT GGAAGTGACTTGTTTTGGGTGCCTTGTGATTGTATCCAATGTGCGCCATTGTCCAGCTACCATG GAAGTTTGGATAGAGATCTTGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCC CTGTAGCCATGAGCTTTGCTCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATAC AATATTGACTACTTTTCAGAAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACT TGGATTCTAGGGAGGGCCATGCACCTGTGAATGCTTCTGTCATTATAGGCTGTGGTAAAAAGCA GAGTGGTAGCTATTTGGAAGGTATTGCACCAGATGGACTTCTTGGTCTTGGAATGGCAGATATC TCAGTACCTAGTTTCCTTGCAAGAGCTGGATTAGTACGAAATTCCTTTTCAATGTGTTTCAAGA AAGATGATTCTGGGAGAATTTTCTTTGGTGATCAAGGAGTACCTACCCAACAGTCTACACCATT TGTCCCGATGAATGGCAAGCT
Genomic sequence	GTTATACTACACTTGGGTGGACGTTGGGACGCCAAATACTTCCTTCCTGGTCGCATTGGATACT GGAAGTGACTTGTTTTGGGTGCCTTGTGATTGTATCCAATGTGCGCCATTGTCCAGCTACCATG GAAGTTTGGTATGCATCTCTTTGTGATCAGTAACGTCATGTTAAGGATATACCGATGCTCTATA TGGGGATGTTCGTGGCAATGTTAACAGATTATCAAATTTGTTTCCTAAGAAATTATTTCTTCGC GGAGGGTCTGTTTAGATTGGTGTCATTTTAAACCATACCATTATTCGGTAAAATTAACAATCAT ATGTCTGCATTTAGTTTTCTACCAAACATTGGTAATATCTAGAGAATTTTGGCAATATCACATT TAATCCATATAAAAAACTTGGCAATGTTGTCAACTTGCTAAAATTTTGGTATTGTCAAATTTTA GAATGGTTTATTTTGGCAGCAAGCTGAACATGCCTGGAATATACACCACAGGTCTATGAAGTCT TAATAAGTAAAACATGCAATCATTACATGAATTTGAACAAGCAATTCAGTAGCATATATGTTTC GCTATTACTTTTATTGATTCTTGTAATTATTCTGCCAGACCTGTGAACATGCAAATTATATTAC TTAGCTCAATTTCACTCTTAATTTATCTAAATTTGCTGATGTTGGAAATATAAGTACAAATCTA ATGCTGATCATAAATTATTGAACATTTCAATAGATCAGTCTAGTAGGTTAGGTACCCACTAAAT AGAGACTAGGTGGCAACTAGGTGGGTCTAAGTGGTGACTAGACTGGGGGATGTTGCTGGCGACT AGCCGTTAGTTGCAGCCTAGGCAGCCGTCCTGGTGAACTCTGCAATAAATACAATGCAAATAAG TTTCAGACCAAGATGCAGTAGCTGTTTTGGCACTCTCAGGTCAGGTAAAACTAATTTTCCCCAT ATTGTCCACTCAGATGATAAAAAACAATTTAGACTGCAATTTTTAGCTAAGAGGCAAGTTTAGG GAATACTCCCTCCATCCACAAAAGTTAGACATATTTCACATTTGAGCTTTTCCAAATAAGTTGT TCCTATTTGTAGTCTTTATGCATCCAAGACTTAAATGAATAGATAAATTAAATGTTTGATTAGA ACCCAAAGAGTTATCTAAATACTCATTGGTTGCATGCTTGCATTCACTCCTTGATTTTGTAACA TGCAAGGTGATTTAATTTCTCCTTGGTCTTGATGACAAAAGTAATATGTGTAACTTTTGTGGAT GGAGGGAGTAACACTTAGTTACGGGATTGCAGGTCTACGAAGTTGATCTTCAAGTTTAGGAACC CAAATGGCAGTTTGTTAGAGGTTACTTAGTTTGTTAATTCTAAATTTCTTATGATGCTAAGTAG TATATATGAAGCACACAAACAAGAGGAATTTGTTTTATATTTTAAAGCAGGTTTAGCACTTATT TGGAATAATTGATTGGCAGGTGCTCCGTCATATGTGGAGCATCTATTATGCAGGATAGAGATCT TGGGATTTACAAGCCATCTGAATCAACTACAAGTCGGCATCTGCCCTGTAGCCATGAGCTTTGC TCACCGGCTTCAGGTTGCACAAACCCGAAGCAGCCTTGTCCATACAATATTGACTACTTTTCAG AAAATACAACCAGCTCCGGTTTGCTAATTGAGGATATGTTACACTTGGATTCTAGGGAGGGCCA TGCACCTGTGAATGCTTCTGTCATTATAGGGTATGCTTCTTTGTCTTCTGCCCTTTTTTTTAAC ATTAACTATTGCTGGAGCAATAATAATTATCAGATTGCTTATTTCCTACTAGGGCATTCTAATT GAACAACAATACAATCACCTGCGCGCATGGCCGCATGTTTACTTGTACATTTACTGATATGTCA GGTAGCAGCATGCATCTGCATATAGAATGAAATAATTCCATTTTTAAACCCCTAAACTTTGCCG AATGTTCAATTGACACTCAACTATAAAATCATTTAACCCTAAAGTTAGAAAGCAAGGTGAGCTT ACTCCCTAAGGTGGTCTCAGTGGGTGCTTTTGACATTGCTGTTAACATGGAAAATAACTCTACT GATCCACCTTCCAAAAGAACCATGCTTGCCTTAGGCCTTGTGTACATAGGTGGCGGTTAGGCCC TATCCTTTCCGTCTTTAAACTAGAAGTGTTAATTACCTTTATAATATTATCTCGTGGCATTATC GATACAACAAGTCATGAATGTACTCCTAGAACAAAAATGATACAAACTAGATGTTGTGCTCTAG TATGAAACACCTCTAGTTTAATGATTAGTTTGCTTAATGAAATTTACAACTTCATTAACATAGT GTGTATCCCTGTGTACAGCTGTGGTAAAAAGCAGAGTGGTAGCTATTTGGAAGGTATTGCACCA GATGGACTTCTTGGTCTTGGAATGGCAGATATCTCAGTACCTAGTTTCCTTGCAAGAGCTGGAT TAGTACGAAATTCCTTTTCAATGTGTTTCAAGAAAGATGATTCTGGGAGAATTTTCTTTGGTGA TCAAGGAGTACCTACCCAACAGTCTACACCATTTGTCCCGATGAATGGCAAGCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.328529879

Conservation Information
Conserved circRNAs	NA
PMCS	0.328529879

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							31567302-31568212(+)
31568207-31567289(+)
31567156-31568187(-)
						
						Potential amino acid sequence
						
							MLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSFSM
CFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLLYYTWVDVGTPNTSFLVALDTGSDLFWVPCDC
IQCAPLSSYHGSLDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTS
SGLLIEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGL
VRNSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLLYYTWVDVGTPNTSFLVALDTGSDL
FWVPCDCIQCAPLSSYHGSLDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDY
FSENTTSSGLLIEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPS
FLARAGLVRNSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLLYYTWVDVGTPNTSFLVA
LDTGSDLFWVPCDCIQCAPLSSYHGSLDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQP
CPYNIDYFSENTTSSGLLIEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGM
ADISVPSFLARAGLVRNSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGK(+)
MASCYTTLGWTLGRQILPSWSHWILEVTCFGCLVIVSNVRHCPATMEVWIEILGFTSHLNQLQV
GICPVAMSFAHRLQVAQTRSSLVHTILTTFQKIQPAPVC*(+)
MACKSQDLYPNFHGSWTMAHIGYNHKAPKTSHFQYPMRPGRKYLASQRPPKCSITACHSSGQMV
*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	31567302-31568212(+) 31568207-31567289(+) 31567156-31568187(-)
Potential amino acid sequence	MLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGLVRNSFSM CFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLLYYTWVDVGTPNTSFLVALDTGSDLFWVPCDC IQCAPLSSYHGSLDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDYFSENTTS SGLLIEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPSFLARAGL VRNSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLLYYTWVDVGTPNTSFLVALDTGSDL FWVPCDCIQCAPLSSYHGSLDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQPCPYNIDY FSENTTSSGLLIEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGMADISVPS FLARAGLVRNSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGKLLYYTWVDVGTPNTSFLVA LDTGSDLFWVPCDCIQCAPLSSYHGSLDRDLGIYKPSESTTSRHLPCSHELCSPASGCTNPKQP CPYNIDYFSENTTSSGLLIEDMLHLDSREGHAPVNASVIIGCGKKQSGSYLEGIAPDGLLGLGM ADISVPSFLARAGLVRNSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGK(+) MASCYTTLGWTLGRQILPSWSHWILEVTCFGCLVIVSNVRHCPATMEVWIEILGFTSHLNQLQV GICPVAMSFAHRLQVAQTRSSLVHTILTTFQKIQPAPVC(+) MACKSQDLYPNFHGSWTMAHIGYNHKAPKTSHFQYPMRPGRKYLASQRPPKCSITACHSSGQMV (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0751100_circ_g.1

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