Detail information of BGIOSGA021280_circ_g.2


General Information
CircRNA Name BGIOSGA021280_circ_g.2
ID in PlantcircBase osi_circ_016164
Alias Chr06:16552012_16552950(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 15520374-15521312  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA021280
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021280_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AC
Number of exons covered BGIOSGA021280-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGTCATGGAAAAACAACCCTTGATAACATAATTTTCTGTGTCCGACAACCATTTGTCATGGT
GGCGCTTTGTTCCAAGAAACTTGATTGCGCTGCCCCctttgaaatataaaccgcattaactgca
atattaactcgaccaagtgtaagtggagataaaaatgctgcaaacctctgcagaacagaaaatt
atcagttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGAAATATAAACCGCATTAACTGCAATATTAACTCGACCAAGTGTAAGTGGAGATAAAAAT
GCTGCAAACCTCTGCAGAACAGAAAATTATCAGTTTGAAAATGAGACAAAAATGAATGCAGCAA
CTACTTATCTATGTGTACGTCTAGGGAGTGAGGGAGAGAGAGGATAAGGTCGCATTACCTGATC
AGGGTCATCTATCGTGCTAACATATTGCCCATCCGGCAAAACATCAGCAACAAGATTCAGCAAA
TTCTCTCGAGGAACACGTATATTGTTAAACCTGACAGACAGTTAAATTAATTTACAATGTGCGT
GATAGGAAGACAAAACTTTACAGAAGTACAAGGGCTCACCAAATTCGTCCATTATCAACACCAT
TTAATCCAATTTTATGGCCACAGTCAGCTATCTGGATATTAGGCATAACATTTTCATGTTCATC
CCTAATCTGAGCTACAAAAGCATGGACTCCTTCATTTCTCCCATTTATATGGAGCTGCGCAAAG
ACTATAGTATGTGTAGCATGCTGTAAAAGGCCACAAACACCAACAGTAAGTAATAACCAAATAG
ACAGCATAGATGTACTCAATTATTTAAGTGAAATTTCATCATACATTAGCAGCTCCACCAATCC
AGTACTTCTGGGCTGATTCACAAGGAGTATTTATCACAAACTCTCTTGTTTTAATATCATAAGT
AGCCACTGTCTCAATTCCTCGGACCTTCAAATTAGTCAAATAAGGCAAAGAAAAATCTCATCAA
CACAGCTAACAAAACTACAATTCAGTAAATTGACCAAAATATCATCACATACATTGCTCCCATG
ACCCAGTTCTGTCATGGAAAAACAACCCTTGATAACATAATTTTCTGTGTCCGACAACCATTTG
TCATGGTGGCGCTTTGTTCCAAGAAACTTGATTGCGCTGCCCC
Conservation Information
Conserved circRNAs osa_circ_030792
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021