Detail information of Os02g0728100_circ_g.4


General Information
CircRNA Name Os02g0728100_circ_g.4
ID in PlantcircBase osa_circ_016381
Alias NA
Organism Oryza sativa
Position chr2: 30301447-30305415  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0728100
Parent gene annotation Similar to SPPA; serine-type endopeptidase. (Os02t0728100-01);Pe
ptidase S49 domain containing protein. (Os02t0728100-02)
Parent gene strand -
Alternative splicing Os02g0727966_circ_ag.1 Os02g0728100_circ_g.1 Os02g0728100_circ_g.2 Os02g0728100_circ_g.3 Os02g0728100_circ_g.5 Os02g0728100_circ_g.6 Os02g0728100_circ_g.7 Os02g0728100_circ_g.8 Os02g0728100_circ_g.9 Os02g0728100_circ_g.10
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0728100-01:6
Os02t0728100-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCCGATATTCGCGGGTCATATGCAGCTTTAACAAAATTCTCGCAGATTTGTGGCAATGACAG
CCCGGAAGAGAAGCGTGTCTTCAACTGATCGGATATctctaacagtacgtatcttctcgatcaa
ctgctcagcaatgatgcctgaactaggaacactcaatgggctgcgagtacgtgttatgcttcca
gatgctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTAACAGTACGTATCTTCTCGATCAACTGCTCAGCAATGATGCCTGAACTAGGAACACTCAA
TGGGCTGCGAGTACGTGTTATGCTTCCAGATGCTCTGATCACTGCAATTTGTTCACCCCCTCCT
TGTAACCCAAGAGTCCATTTACTTACACGTGAATATTTACTGCAAAGAGAATCAAAGTCATTTT
AAAAAATGTAACATAGAACTTTACAGTACAAGAAAAGAATATGGCAGCATTCGTTAAGACAATA
AGTAACAGGAGCAGATTTCTAGACCTTGTTAGATCTAGTTTGGCCAGTTTGCTAGAGAGGACCT
CTGTTTATTGCTATTTTTCCATGAATGTGTATGACGGTGTTTATTGTTTAGTTTTAGTGGAAAA
TGGAGAAAAGAAATAAAGGGCATGAAAATTTTCTAAACTATAGTTGGTTTCTGTTGGGGATCAA
TCACCTCACAAGTGAGTCGCTGGTACTTGCCTGAAAGTTTCTCATATATTGCACAAGCTAAGAC
TTACAAGGGTATACATCTCCTTCTATACCTATTTGAGTATGATGCTACAGTAACCGACCTACTA
CAGTACCATTGCGCCGAACTTTTACAGCTCACATTGAACTAGTCTCCTAGCTGTCCTTTGGTAA
GCCGTAAGCATTGTACCAATTACTATAAGACACTAGTAAAAACAGGTAAAGCAACAGCTACATG
AAGCTACTGAAAGCTTCATGCTCGACATACAAAATCCAAAATGACTACTACTAGTAGTCTAGTA
CTACTACCTGTCATTGACTAAGCAGGACATACCTTACTAGTTAATCTAGTTGACGCAAGGACTG
TTTGTAATTTGCTAACAGTTTCCACCCGGTTTTCCAAAAGTTTGATCCAAATTACCTGTAATCA
ACCATACGCAGACTTTTCTTGTCTTTCTGTGCTACTCTCTCCTTCAACATTGCCATGACCTATA
GGATAAGATGATGCCAAAAAAAGAACACAATAGTAGCCACTCAAAAGACGAGGAATAAACATTT
CATTATGTGAATTAAGTTAGATAATTAAAAATGCAAATTTTAAACTATGTTCTCAGTTTATTTT
GGAGTTTGTTTAGAAAGTTTGGGTTCTTTTCAACTCTTAAGGAACTTGTACTAGATCCCAAAAG
GTCGCAACTGAACCTTCTCATCCAAACTGTCCGTTAAGGTGGAACACTTGTCTAAAGAGCAATT
CTCATTCTTAGGGTAGTTGGGGGTTTGTCCCCTCACCTACCCTTTTTTTTTCAGCTAAAGAACT
TATTAGCTGTGTGCTGTGTGGCAGAGGCCGAGGATGTAATACATTTCCAAAATCTTAAAAAAAA
AGAACAATTCTCATCATTTCTCTTCAGGTACATGTAGTTATTTTTGTATCCATGGATCAAGTAC
TCCCTCCGTCCCAAATTAGTTCTCTTTAGAATTCAAACTTTGTCCCAAAAAAGTTGTCACAATA
GAGAACTACATGTCCCTTCAATCACTTCTAATTTAATTTTGGGAAAATCCGTTTCATATCATCG
AAAGTTTCCAAGTTTAGCTTTATAGCATCGAAAGTTTGGGTGCACTTTAATACCACTAAAAATT
TCCACCGTTACTCTTTCTACCACTGCCGTTTACTTCCGTCTAGATTTTCTCGTTTCTGTTTAAT
TTTCCGTAGAGAAGGCCAAACAAAATGACTGTACTACCCTTCTTTCACATAGCAGTTTCCTGGG
ACGATCTTTTTTCTCGTTCTCTTTCCATAGGCCCATATGTGGAGGGAAACAGATTGATTTTGCT
CGTTGTTTCAATCAGCCCGATCTTTGCGTACATTCAGATGGGAGAAAATCGTGGCTGGAGCGAG
GTCGTTCCGTCGTTGTGGACCTTGTCGTCATGGTTATCGGTGGGGGAGAAACTGGAATATCTTG
TCGCCGGCGCGGCGGCACCGCCGAGCCCGTTTTAATCTGAGGGGATTGGATCATTGGAGAACCT
GCTAATAGAATAGATAATGTTGCCGGTGACCCCGGCGCTGACAAAAGGAGCTCAGGAGGGGAGC
TTCAGTCGAATCTCTCGTCGTCGCCGTTGAGATTAGATGGACAACGGAGAGGGCTCGCCGGCGG
GGAGCCGAATCACACCGCGGTGAGCGGCGGCCGGGTTCAAGCTTGGTGGCGGGCGGCGGGATGT
ACATGGCAGAGAGGACAAGCTCGGCAGCAAGGCGGAGATAGAGGGAAGAGCTCGGCAGGAAGGC
AGAGCAGCTCGGCGGCAGGAGGGACATGGCGCCACTTCCGTGATGGCGGAGATCCAGGAAAGAT
GCAAGGCAACGAAAGAGCTGCCTGCTGCGTGCGGAGCTGGTTGCCTCTACAGGGTAATTTGTCA
TACTTCACGTGAGAGATTGAAATATGGACGGAAATGCTACAAGCAGTAACGGTGGAAACTTTGA
ATGGTATTAAAGTGCACCGTAAACTTTTGATGGTACAAAACTAAACTTGAAAACTTTCGATGGT
ATAGGACCAATTTTCCCTTTAATTTTTTCTCTTTTCTACCCTCAACCATCCTCCCATATCCAAC
CATACATTATTTAATAAAGGGGACTATGGTCTTTTTTAGCAAACTTTAATCCATGCTAAACAAC
CTAGAACGACAACTAATATGGGACAGAGGCAGTAATATGTTGCATGCTTATAGCACTGAAACTT
GACGATTGAAGCATCACTTTGATTCCCAGTTTGACCATGGATGTGAGCAAACGATGTAGATGTA
GCAACTTATATAAGATAAGTTATTTATGTAATTTACTTGGTGCCTTAGCAAAAAGTTAAAATGA
ATCTGTACCTCATCATCATAAAGTAAATCTGTTATCCAACCTTCTTCCTTAAGTCTGGCAACCT
GATAGACTCCTGAATTAATGAATTCCTCGATTTCTTCTTTTTTCTTCCCTACAGAAGAAAAAAT
ATCTAATGAAAACTTATCCTTTAAAAAGGTGGAGTATATCTATTTTGAATTACCATGTTTGGAA
GATATTGTATCCAGCCAGTTTCCATAAATATTGTCGAGCAGTGTGGCTAGCATCTCCCTAACCT
CATTTGACATGCTCTTCCGTGCAAGTTGGTCTCCCGCACTTTTGTAACGACCAATTCGCTGAAT
TTCTGGTTCTATCCCGACTTTCTCAAGAACACCTTACCAATTGAGTTCAAAAGCATTAGATACC
CAGAAAGGAACTTGCTACATTCAATTAGCTTGATTTTGTGGAACAGCAATGAAAGTGTATGATC
AAGCTTACTAAAATTGGTTCCAAGGAGAAGTGAAACTATAAAAAATGCATTGAACATTACAATA
GAATGAAGTACAGTTTCTGTATAAAATACCATAAGAAGACATATAAGTAAGTTCATTAAGTGTA
AGCAATCATTGGAATAGCTATGTAGTTTAGTTGCACCATAACAATACTAGAAATCGTAAAGTTC
CTTTCTCCTGCTAAAAATGAAACATAAAATAAGTTTGTGTTTAACCAATAACCACATCGATGAA
ACATAAGTTTTGTGTCATCATAGTACATGCAATTACCTCTGAGAAATGTTTGCTGAACAGTTAG
ACCAAACAAAGCAACATAAGCACTTGGCGGTGCATACAGCTCACCACACGCACAAGCAAGGTAG
TACTCTTTCTCCCCACACACAGGCATATAACCAACAACAAATTTACCTACAAAGTCATGCAGCA
CCTGCTCATCATCTGACAAGTGACAAGAAGAACAGAGATAAGATACTAAATTCAGCTCAGTTTA
TAGTTTTACCGGACTTCTTGAAATCGACAATGTGTCTTCTGATCTCATCCACCTTCCCCCACCC
ACATCTCAGAGGCTCTATGTGCAGATAGATCCCCGATATTCGCGGGTCATATGCAGCTTTAACA
AAATTCTCGCAGATTTGTGGCAATGACAGCCCGGAAGAGAAGCGTGTCTTCAACTGATCGGATA
T
Conservation Information
Conserved circRNAs NA
PMCS 0.110846993
Functional Information
Coding potential Y
Potential coding position 30305374-30302336(+)
30305122-30305347(-)
Potential amino acid sequence MTARKRSVSSTDRISLTVRIFSINCSAMMPELGTLNGLRVRVMLPDALITAICSPPPCNPRVHL
LTREYLL*(+)
MPVCGEKEYYLACACGELYAPPSAYVALFGLTVQQTFLRGVLEKVGIEPEIQRIGRYKSAGDQL
ARKSMSNEVREMLATLLDNIYGNWLDTISSKHGKKKEEIEEFINSGVYQVARLKEEGWITDLLY
DDEVMAMLKERVAQKDKKSLRMVDYSKYSRVSKWTLGLQGGGEQIAVIRASGSITRTRSPLSVP
SSGIIAEQLIEKIRTVRDIRSVEDTLLFRAVIATNLREFC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017