Detail information of Os05g0511700_circ_igg.1


General Information
CircRNA Name Os05g0511700_circ_igg.1
ID in PlantcircBase osa_circ_028489
Alias Os_ciR3986
Organism Oryza sativa
Position chr5: 25347999-25352761  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os05g0511700_circ_igg.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGACAAAGAGTACAAGGTCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACT
TCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGatcttagtatatagaaacaaagcatcat
tgccatattcccaggaaatatctgcagttttggggttgttgcaataacttatcttggctgcagc
tcgaactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTTAGTATATAGAAACAAAGCATCATTGCCATATTCCCAGGAAATATCTGCAGTTTTGGGGT
TGTTGCAATAACTTATCTTGGCTGCAGCTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTA
GAATGGAGGAGGTCGTCCCAAAAGATTTCCCTGTCAGGTGAGTTCTGATTCACATTTATTCCTA
GTTACCAACTCATCTGTTGACAGGATTCAGTAACAGTTTATTGTTGAAATTATTGGATCAAGTA
ATTAAGATCTTTGAAGTGTTGATTGAATTATTAATGGTTCTTTTATTTTCTAGGCTTGTAGCAT
TCAACTTGGGCTATCTTCCAGGAGGAGATAAAACAATAATCACTGTACCTAAGACGACTGAGCT
GGCTTTGCAAGCTGCCAGTAGCATTGTCAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATT
GGACATCCAGGTGGAAGGTACATGCGAATGCTAACAATGTGTCCATGTACAATACATAGGGCTA
TCAACTGCTTGCTCGTTGTAAATTCATACATATTCTAGATGTGCAGCTATATATGCTAGATTGA
ACTGTAGTATATGATGAATTAAGTTAACAAAAAGAATGTCTTTGATGATAATTTTCGCATGTTT
TTAACACATCAGAAAATCTTTTTTTACAGTATTGTATTCAAATAATTTTAAGACTTGATTTATT
TATCTTCTTTTGTTATGATCCTTAGGGATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTT
GCCTATTGATACCTGGATGAGCTGCAAGTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTC
ATTCTCCTGTACAAGAAATGATCACACCTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGT
GAGCGACCACATGCTTACTTGCATGCCAAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTT
ACAAGGCATTTCCATAGGATTTTACTGGGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGA
GCTTCTTTTTCGCCAGGCCAACTTTTGAGAGCTTCACAACTATATATATGTTTCAAGCACTGCA
GTTTAAACGAAGGGCAATTGCTTTGAGCCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTT
GATGTTTTGTATTGGCAACAATAAAGGGGTAGCACACGAGACATTAAAGTGGATGGATGCAAGG
AGACAAGGGTTTAGACATGTTTAGGCATACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGAT
TGTATTGATCATGGTGTTCTTGGTTGTGTTGATCTCGTGGATCTCTTGCCTCATGCCTGTGGAT
TGGATCTGTCGAATTGTATTGATCATGGTGTTCTTGGTTGTGTCTATCTTGTGGATCTCTTGCC
TCATGCCTTTGAAGGGACTCCCTGTTCACCTTACATATGGAAGGTTACAAGGAGGAAAAACACA
ACTTTAATTTTGTAATCTATACAACGTAATATTCAGCCGAAGCTCTATACCCTGCCTTGAGACA
TAAGGTAACATGGCAACAAAGTCCTACTCTATCTAATATTACATGGATGCATTCCACCTATCTG
TAGTCGGATATGTAGGCTGTGTGGGAACATGATACCAATAACCTCCACAATAGTCCCCGAGATC
TTCACAGTTGAGTTGCGGTCTTCTTTGTGATTCTTGACGAATACTGAGTGCTTCAATCTTTTCT
ATGAAGGCTTCCCAAGTGTCAAAGAGGTTGTAGAGAGCTTTCCAAAGAATTGACAAAATAGGTG
CATCAAATAGATGCATCTATTAGGTGTAGCCCATGACTATGTGCTTAGTTGAGTAAAGAATAAT
AATCATTGTTAGCAAAGTGGCTTACACCTGGACGCAATATATATGGTGTGAATCCCCGATTGAT
ATGACCCGAGTGATATACCGATTACATAAAATGTGATGTGGGCAGCTCTGGACCAACCGCGTCT
TGAGAATATGATGCGCGTAACTCTGAACCAACCGCGACTTAAATCATGTGTTTTTCAATCAACA
TCTGACTTACATAAAAAGCTAGTCGCGATGCTTCATGAGCATGCTAATACCCTTAGAAAATAAT
ATTACCACACGGTAATGCTTAACGAAAGAGGCATTGGGTAAAATAGCACGTGGGCCGTCGGAAC
AACACCACCCAAGACCCAATAGGGCATGCTTAATTCACCACTCCTGGTTGTAATTGGGTTATGA
ACGCAATAGGCTCTTGGCAGTGACACGATACCGAGTCAGTCGGTCCTGCATGACCAATCCACTA
GACCACCCCTCTTGTCAGTTTCACGCCTTTGAGCTATGATGACGGTGTGGTGCGGATCTAACCC
GCGAGAAATGTATATTTCTACAAATATTTTAAAACATGTATATGTATGCAAAATTATGAAAAAT
AATGTATACTTTAAATTTCAATTCCAAAAAACACTACCAGGAATAACAAAGATTAACATGATAA
ATCTTAACTTATTGAAACCATCATCATCGTCATCGTTATAGGAGTACTGTTAAGCATAAAACCA
ACCACAACAACACGATCGAGATATTTTTGTTCCAGTTCCTTCAGCACTGACGCGCACCATCAAT
GAAGAAGCATATCAATGGAGCAATGGGTTGACGACTTGACCGGCGAACACCACGAGGCCACTCA
CCTCCTCCACGATGAAGAAAAGGAAGGGGTGATCGGCGACGAAATCGACGATTTGATCGTCCGG
CATGGCGAAGCCCATGATCTCCCCGACGGTGCCCGCAGCAGCCACGGTCCCTTCCTCATTCACA
TTGACGAAGCACTGGTGGAGAAGGGACGAGACGGCTGTCCCCTGAGGCGGGTCCAGCAGCATCC
CCGAGAACGAGTTGTCGGCGGCGGGGAGGAATGGCAGGTCGAGGCCGAATTCCCGGAGGAGACG
CGACGCCTCCACCTTGAGCGACACCTCGAATTTGGGGATCTTGAGCTCGCCGACCGCAACAGGC
TGCGCCGGCACGATCGTCCTGCGCAGGAACGCGGCCGGGTTGGAGGCGAGCTTGCGCGCGAGCT
CCGGGAGGCCGTCGCGGTCGTCGGGGAGGTAGATGTACATCGCGAACATCTTGTCCCCGCCGGC
GGCGCCGCCCGTGCGGTACATCATGCGCAGGACGTTGAAGCCCGGGTGGCAGCCGACGTCCATG
AAGGCGTGCTGGTGGCTCCCCGCCATGAATGGCACGCGGACGTCGTGGTCCGGCGAGACGTGGA
AGTCGCCTTCCTCCGTGAGGTGCGGGAAGAAGGGGTGGTCCCAGTAGGCGTTGAAGTAGAGTGA
GTTGGCGAGGAAGACCGAGGCGGAGATGGCGCCGCCGCCGCCGCCGCTGCCGTCGTCGTCGTCG
TCGATGGAGTTGGAGAGGATGTCCTTGACGAAGCCGCCGGTCTGGCTACTGAACCACTCGTTGA
TCTCGGCCCTCGCTGCCGCGGGGTTGCCGGCTGACCGCACGGCAGCCTTGAACACGGAGGCGGC
GGTGTCGGCGAAGGCGGGGTTGAGGCGGAGAGAGGCGTCGACCCAGACGGCCATGGCGGAGCGG
ACCTCGGGATTGCTGGACGCCGACGGAAGCCTCCTTGGACGCGAGCGCCGTGTGGGCGTCTGCG
CCGGCTGGGCCGAGGAAGGCGACGATCTGCTCGCGGGTGGCGCCAGCCGCGCCGGAGGCGAGGA
GGGTGAGGGCGGCGTGGAGCGACAGCGGCGAGAAGGCGAGGTTGGTGGTGGTGCCGTGCTTGTC
GTCGAGGAGGAGGTGGTGGAGGAGGCGCATGGTGAGCTCCACCTGGTCTCTCACGGCAGCTTCC
TGCTCCATGCTCTTCTCTGCGCTCCGATTCTCCGAGACCGAGAAATTTGGCCTGTGTCTTGATC
GGAAGCTGGTTGAGCTGCGGCGGCGGGGGCGAGGGATAGCTATCCTTTTCCTAGGTTAAAAAAG
TGTCAGCTTAAGTATGATACTCCCTTCGTTTCAAAATATTTGACACCGTTGACTTTTTAGCATA
TGTTTAACCGTTTGTCTTATTAAAAAAATTATGAAATATGTAAAACTAAATATGTACATGAAAG
TATATTTAACAATGAATCAAATGATATGAAAATAATAAATAATTACTTAAATTTTTTAAATAAG
ACGAATGGTCAAACACGTACTTAAAAAGACAATAGTGTTAAATATTTTGAAACGGAGGGAGTAG
CAACTGGCTGGCTTGCACGATGGACGGACGGACAGTTTGTAATGGGACGGCCGAAAAAACGACG
AATCCAGCCACCGAAAATCATTCGACAAATGTACAGCAATTTCGTTTCTGTTATGCGTGAGATA
TTTACCTTTCAGCCTAAAAGTAAGCACTACTACTACATTAGTGCAATTTACAGTGTACTGGGCA
ACTATGAAATGGGATTCTTTTTTGACAGAGTATGGGATGGAAATTCCATTAATGGGAAATGCTC
TCTAGGATTTAACCGGAGATGTGTAAAAGAATACATGTACGCTTTAGCTATTCATATCTTTGTC
TTTTGGTTGTATGATTAGGGTGTGGAGAAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCC
ACATGCAGGAACAGCAATGATACATTCGCTATGCTTAAAATGGTAGCTGATGAAAGAGACAAAG
AGTACAAGGTCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTT
CTGAAAATGGCCGTCAATAGCCATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.313077308
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015