Detail information of Os05g0511700_circ_igg.2


General Information
CircRNA Name Os05g0511700_circ_igg.2
ID in PlantcircBase osa_circ_028490
Alias Os_ciR1330
Organism Oryza sativa
Position chr5: 25348090-25352761  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os05g0511700_circ_igg.1
Support reads 12
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGACAAAGAGTACAAGGTCGTGTATATGGGTTGGACATTCAGGAGTCCGCGATAGCCAGCACT
TCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAGctcgaacttgtcaagttgtttacaatct
gtcacagtagaatggaggaggtcgtcccaaaagatttccctgtcaggtgagttctgattcacat
ttattcct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGAACTTGTCAAGTTGTTTACAATCTGTCACAGTAGAATGGAGGAGGTCGTCCCAAAAGATT
TCCCTGTCAGGTGAGTTCTGATTCACATTTATTCCTAGTTACCAACTCATCTGTTGACAGGATT
CAGTAACAGTTTATTGTTGAAATTATTGGATCAAGTAATTAAGATCTTTGAAGTGTTGATTGAA
TTATTAATGGTTCTTTTATTTTCTAGGCTTGTAGCATTCAACTTGGGCTATCTTCCAGGAGGAG
ATAAAACAATAATCACTGTACCTAAGACGACTGAGCTGGCTTTGCAAGCTGCCAGTAGCATTGT
CAGTTCTGGGGGACTCATAAGTGTCCTTGTCTACATTGGACATCCAGGTGGAAGGTACATGCGA
ATGCTAACAATGTGTCCATGTACAATACATAGGGCTATCAACTGCTTGCTCGTTGTAAATTCAT
ACATATTCTAGATGTGCAGCTATATATGCTAGATTGAACTGTAGTATATGATGAATTAAGTTAA
CAAAAAGAATGTCTTTGATGATAATTTTCGCATGTTTTTAACACATCAGAAAATCTTTTTTTAC
AGTATTGTATTCAAATAATTTTAAGACTTGATTTATTTATCTTCTTTTGTTATGATCCTTAGGG
ATGAACTTGATGTTGTTGAATCATTTGCATCAAGCTTGCCTATTGATACCTGGATGAGCTGCAA
GTTTGAAATGCTCAATAGACCAGCGGCTCCAGTACTCATTCTCCTGTACAAGAAATGATCACAC
CTTCTATGACCTACTTGTGGGGAATGACGGAGTTAGTGAGCGACCACATGCTTACTTGCATGCC
AAGTGCCACAATGACCAAGGATTCAAGATTTGAAGTTACAAGGCATTTCCATAGGATTTTACTG
GGTGGACAGCTGTGGGTATTGATAACAACTTTTGAGAGCTTCTTTTTCGCCAGGCCAACTTTTG
AGAGCTTCACAACTATATATATGTTTCAAGCACTGCAGTTTAAACGAAGGGCAATTGCTTTGAG
CCACACTCGTGACTTTACTCCTTTTTAGGGTTGTGTTGATGTTTTGTATTGGCAACAATAAAGG
GGTAGCACACGAGACATTAAAGTGGATGGATGCAAGGAGACAAGGGTTTAGACATGTTTAGGCA
TACCCTACTCTTGTTTCGTGGATTGGATCTGCCGGATTGTATTGATCATGGTGTTCTTGGTTGT
GTTGATCTCGTGGATCTCTTGCCTCATGCCTGTGGATTGGATCTGTCGAATTGTATTGATCATG
GTGTTCTTGGTTGTGTCTATCTTGTGGATCTCTTGCCTCATGCCTTTGAAGGGACTCCCTGTTC
ACCTTACATATGGAAGGTTACAAGGAGGAAAAACACAACTTTAATTTTGTAATCTATACAACGT
AATATTCAGCCGAAGCTCTATACCCTGCCTTGAGACATAAGGTAACATGGCAACAAAGTCCTAC
TCTATCTAATATTACATGGATGCATTCCACCTATCTGTAGTCGGATATGTAGGCTGTGTGGGAA
CATGATACCAATAACCTCCACAATAGTCCCCGAGATCTTCACAGTTGAGTTGCGGTCTTCTTTG
TGATTCTTGACGAATACTGAGTGCTTCAATCTTTTCTATGAAGGCTTCCCAAGTGTCAAAGAGG
TTGTAGAGAGCTTTCCAAAGAATTGACAAAATAGGTGCATCAAATAGATGCATCTATTAGGTGT
AGCCCATGACTATGTGCTTAGTTGAGTAAAGAATAATAATCATTGTTAGCAAAGTGGCTTACAC
CTGGACGCAATATATATGGTGTGAATCCCCGATTGATATGACCCGAGTGATATACCGATTACAT
AAAATGTGATGTGGGCAGCTCTGGACCAACCGCGTCTTGAGAATATGATGCGCGTAACTCTGAA
CCAACCGCGACTTAAATCATGTGTTTTTCAATCAACATCTGACTTACATAAAAAGCTAGTCGCG
ATGCTTCATGAGCATGCTAATACCCTTAGAAAATAATATTACCACACGGTAATGCTTAACGAAA
GAGGCATTGGGTAAAATAGCACGTGGGCCGTCGGAACAACACCACCCAAGACCCAATAGGGCAT
GCTTAATTCACCACTCCTGGTTGTAATTGGGTTATGAACGCAATAGGCTCTTGGCAGTGACACG
ATACCGAGTCAGTCGGTCCTGCATGACCAATCCACTAGACCACCCCTCTTGTCAGTTTCACGCC
TTTGAGCTATGATGACGGTGTGGTGCGGATCTAACCCGCGAGAAATGTATATTTCTACAAATAT
TTTAAAACATGTATATGTATGCAAAATTATGAAAAATAATGTATACTTTAAATTTCAATTCCAA
AAAACACTACCAGGAATAACAAAGATTAACATGATAAATCTTAACTTATTGAAACCATCATCAT
CGTCATCGTTATAGGAGTACTGTTAAGCATAAAACCAACCACAACAACACGATCGAGATATTTT
TGTTCCAGTTCCTTCAGCACTGACGCGCACCATCAATGAAGAAGCATATCAATGGAGCAATGGG
TTGACGACTTGACCGGCGAACACCACGAGGCCACTCACCTCCTCCACGATGAAGAAAAGGAAGG
GGTGATCGGCGACGAAATCGACGATTTGATCGTCCGGCATGGCGAAGCCCATGATCTCCCCGAC
GGTGCCCGCAGCAGCCACGGTCCCTTCCTCATTCACATTGACGAAGCACTGGTGGAGAAGGGAC
GAGACGGCTGTCCCCTGAGGCGGGTCCAGCAGCATCCCCGAGAACGAGTTGTCGGCGGCGGGGA
GGAATGGCAGGTCGAGGCCGAATTCCCGGAGGAGACGCGACGCCTCCACCTTGAGCGACACCTC
GAATTTGGGGATCTTGAGCTCGCCGACCGCAACAGGCTGCGCCGGCACGATCGTCCTGCGCAGG
AACGCGGCCGGGTTGGAGGCGAGCTTGCGCGCGAGCTCCGGGAGGCCGTCGCGGTCGTCGGGGA
GGTAGATGTACATCGCGAACATCTTGTCCCCGCCGGCGGCGCCGCCCGTGCGGTACATCATGCG
CAGGACGTTGAAGCCCGGGTGGCAGCCGACGTCCATGAAGGCGTGCTGGTGGCTCCCCGCCATG
AATGGCACGCGGACGTCGTGGTCCGGCGAGACGTGGAAGTCGCCTTCCTCCGTGAGGTGCGGGA
AGAAGGGGTGGTCCCAGTAGGCGTTGAAGTAGAGTGAGTTGGCGAGGAAGACCGAGGCGGAGAT
GGCGCCGCCGCCGCCGCCGCTGCCGTCGTCGTCGTCGTCGATGGAGTTGGAGAGGATGTCCTTG
ACGAAGCCGCCGGTCTGGCTACTGAACCACTCGTTGATCTCGGCCCTCGCTGCCGCGGGGTTGC
CGGCTGACCGCACGGCAGCCTTGAACACGGAGGCGGCGGTGTCGGCGAAGGCGGGGTTGAGGCG
GAGAGAGGCGTCGACCCAGACGGCCATGGCGGAGCGGACCTCGGGATTGCTGGACGCCGACGGA
AGCCTCCTTGGACGCGAGCGCCGTGTGGGCGTCTGCGCCGGCTGGGCCGAGGAAGGCGACGATC
TGCTCGCGGGTGGCGCCAGCCGCGCCGGAGGCGAGGAGGGTGAGGGCGGCGTGGAGCGACAGCG
GCGAGAAGGCGAGGTTGGTGGTGGTGCCGTGCTTGTCGTCGAGGAGGAGGTGGTGGAGGAGGCG
CATGGTGAGCTCCACCTGGTCTCTCACGGCAGCTTCCTGCTCCATGCTCTTCTCTGCGCTCCGA
TTCTCCGAGACCGAGAAATTTGGCCTGTGTCTTGATCGGAAGCTGGTTGAGCTGCGGCGGCGGG
GGCGAGGGATAGCTATCCTTTTCCTAGGTTAAAAAAGTGTCAGCTTAAGTATGATACTCCCTTC
GTTTCAAAATATTTGACACCGTTGACTTTTTAGCATATGTTTAACCGTTTGTCTTATTAAAAAA
ATTATGAAATATGTAAAACTAAATATGTACATGAAAGTATATTTAACAATGAATCAAATGATAT
GAAAATAATAAATAATTACTTAAATTTTTTAAATAAGACGAATGGTCAAACACGTACTTAAAAA
GACAATAGTGTTAAATATTTTGAAACGGAGGGAGTAGCAACTGGCTGGCTTGCACGATGGACGG
ACGGACAGTTTGTAATGGGACGGCCGAAAAAACGACGAATCCAGCCACCGAAAATCATTCGACA
AATGTACAGCAATTTCGTTTCTGTTATGCGTGAGATATTTACCTTTCAGCCTAAAAGTAAGCAC
TACTACTACATTAGTGCAATTTACAGTGTACTGGGCAACTATGAAATGGGATTCTTTTTTGACA
GAGTATGGGATGGAAATTCCATTAATGGGAAATGCTCTCTAGGATTTAACCGGAGATGTGTAAA
AGAATACATGTACGCTTTAGCTATTCATATCTTTGTCTTTTGGTTGTATGATTAGGGTGTGGAG
AAGTATTGTTCGGAAAGGGGATACTGTGGTTGATGCCACATGCAGGAACAGCAATGATACATTC
GCTATGCTTAAAATGGTAGCTGATGAAAGAGACAAAGAGTACAAGGTCGTGTATATGGGTTGGA
CATTCAGGAGTCCGCGATAGCCAGCACTTCCTCTTTTCTGAAAATGGCCGTCAATAGCCATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.734420459
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015