Plant Circular RNA Database

Detail information of Os02g0128200_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0128200_circ_g.2
					
						ID in PlantcircBase
						osa_circ_012930
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 1458417-1460853  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0128200						
					
						Parent gene annotation
						
							Similar to Transcription factor HBP-1a (Histone-specific transcr
iption factor HBP1). (Os02t0128200-01);Similar to Transcription 
factor HBP-1a (Histone-specific transcription factor HBP1). (Os0
2t0128200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0128200_circ_g.1 Os02g0128200_circ_g.3 Os02g0128200_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0128200-01:11
Os02t0128200-02:11

General Information
CircRNA Name	Os02g0128200_circ_g.2
ID in PlantcircBase	osa_circ_012930
Alias	NA
Organism	Oryza sativa
Position	chr2: 1458417-1460853 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0128200
Parent gene annotation	Similar to Transcription factor HBP-1a (Histone-specific transcr iption factor HBP1). (Os02t0128200-01);Similar to Transcription factor HBP-1a (Histone-specific transcription factor HBP1). (Os0 2t0128200-02)
Parent gene strand	+
Alternative splicing	Os02g0128200_circ_g.1 Os02g0128200_circ_g.3 Os02g0128200_circ_g.4
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0128200-01:11 Os02t0128200-02:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CGCTGACAATTTAAGGGCAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAG
TACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgagcagtctccagccactacatctggca
ctacagctccagtttaccctgaatggcctggttttcaggttattgcatctttacttattaagat
gaacttat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTC
AGGTTATTGCATCTTTACTTATTAAGATGAACTTATAGCTTTCCTCTACTGGATTTTCAATTTA
ATTTTAACGACATAACAGTGCTTTATATTTTGTTTTTTAACCTTGAAGGCCTACTCGGCAATTC
CACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGG
AGCTCAGGTACCCTTTGTATCTTAAAACTTTATTGGTTCCTTTTATCTGATATCTGTTGAAATT
ACGGGAAAAGTGGCAGTAGGAGCTTTGTGCTATCTGGAATCTAGGTCTGGCTTATCCGGACTAG
GACAGTGTGCTAGGTTAAATTGGAGCAACGTAACTGAATCCTTTACTAAATATTATTATCTGTT
TTTACTTTAATACTCACTGGACACAAGCATATAGATATAGGTAACATCAAAATGTAGATGGTTT
CATCTTTCAAAGATCAGAAGAATTAGCTAGTATGCAACATGTAGATTATGGTTCTATTGTTAAA
TCAGGTGGTCGAGTGCAATGCAAAAAATTAAGCATTCTGCCGGAGGTAAAAAATGGCTATAGAA
GTTAGGCAACTGCAAACTGCTTTCCTTAACAGCATATTTGTGTGTTATTTATAACTATTTTCTT
TTGTACCTCAATTCAAAATATTGTCCCTTTAATTTCAGCCCATGGTGCCACCTTACGGGACACC
ACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGTATGCATT
TTCTACCTGACAGTCATAATCAATAATCTTCTCTTTGTACTTGCACCCATTTATTGACATGCTT
GTATTAACAATGAACTAATTGGTAGGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAAT
GGAAATGTTGAAACTGCTGTAAGTAACCCATTTTTTTTAAAAAAATATTTTGGTGATCATCATG
TTCATGCAATCCTGAGATGCTTCTTTCAGGGAACTGCACCAGGTGCTTCAGAAATTAACGGTAA
GTCTTCTGCAATGTCAACATCAAGGTTTTTTGTGCAAGTAATTCACATTTATGCTTCTGATCAT
AATTTCAGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCAC
AGGTTTTTTTTTTTAAAAAAAAATATGAGTTCATTTAGTTCTGACAAAACCTAATCTCAGGTAG
CTTGAACATGCAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAA
TGTGAGATTGATCTCTATATATATTTCATTCAAATCACTTATTTGGTGCATTCTTTAGGCAGGA
AGAAAAATCATTAACCTTGAAAGATAGCCTATCAACCCTGTTTTATGTTGCTCCAGGATTCACA
TTCAAAGGAAAATGATGTAAAGGAAGATGGTATGTACTTGAGGACCTATTTATGGTTTTGTGAG
ACACCAATAGAGCATATTTCTTTGTGTGAGATTAAGTATGCATTTGATTATGTAGGTAGTTCTC
AGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGT
AGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCT
GGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAAT
GGGTACAAGTCCTTTGACAACGAGCGTTTGCATTATTTTTTTGATAAGTTTTGAATTAAAATCC
TTGTATATGGTAATAGAATGGTAGTCCACAAGGCAAGAAAAAAATTTGCTCTACTCTAGCCATA
ACGACTTCCATAATGAATGTTAAATCCACTTATTTTGGGAATGGGGATTAGCATGTGGCAAGAT
GCCATCTTTTAATTTTGAAGGGATGATTTATATATTTATTTTGGAAAGGGTTGTTGTCTTTTGA
AGATGCTTATTTTTATTCTTTGCCCTTGTGTATATGTCAATGTAAAGATGTCGCTACTTGTATA
ATTTAATTATACCTTGGCCATTTTCAGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGT
CTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGTATGATGTTAAATTGTTAACAT
GACATTGGACTCGTTATTTTCTTCAGAACATCATGGATAGTCTTATTGAAGCACCAAAATATTT
GTTCCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCCTCT
CTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCAC
TCAAG
						
					

			
		

Sequences
Splice junction sequence	CGCTGACAATTTAAGGGCAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAG TACGAGGCACTTCTTTCACACAATGCTTCACTCAAGgagcagtctccagccactacatctggca ctacagctccagtttaccctgaatggcctggttttcaggttattgcatctttacttattaagat gaacttat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTC AGGTTATTGCATCTTTACTTATTAAGATGAACTTATAGCTTTCCTCTACTGGATTTTCAATTTA ATTTTAACGACATAACAGTGCTTTATATTTTGTTTTTTAACCTTGAAGGCCTACTCGGCAATTC CACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGG AGCTCAGGTACCCTTTGTATCTTAAAACTTTATTGGTTCCTTTTATCTGATATCTGTTGAAATT ACGGGAAAAGTGGCAGTAGGAGCTTTGTGCTATCTGGAATCTAGGTCTGGCTTATCCGGACTAG GACAGTGTGCTAGGTTAAATTGGAGCAACGTAACTGAATCCTTTACTAAATATTATTATCTGTT TTTACTTTAATACTCACTGGACACAAGCATATAGATATAGGTAACATCAAAATGTAGATGGTTT CATCTTTCAAAGATCAGAAGAATTAGCTAGTATGCAACATGTAGATTATGGTTCTATTGTTAAA TCAGGTGGTCGAGTGCAATGCAAAAAATTAAGCATTCTGCCGGAGGTAAAAAATGGCTATAGAA GTTAGGCAACTGCAAACTGCTTTCCTTAACAGCATATTTGTGTGTTATTTATAACTATTTTCTT TTGTACCTCAATTCAAAATATTGTCCCTTTAATTTCAGCCCATGGTGCCACCTTACGGGACACC ACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGTATGCATT TTCTACCTGACAGTCATAATCAATAATCTTCTCTTTGTACTTGCACCCATTTATTGACATGCTT GTATTAACAATGAACTAATTGGTAGGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAAT GGAAATGTTGAAACTGCTGTAAGTAACCCATTTTTTTTAAAAAAATATTTTGGTGATCATCATG TTCATGCAATCCTGAGATGCTTCTTTCAGGGAACTGCACCAGGTGCTTCAGAAATTAACGGTAA GTCTTCTGCAATGTCAACATCAAGGTTTTTTGTGCAAGTAATTCACATTTATGCTTCTGATCAT AATTTCAGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCAC AGGTTTTTTTTTTTAAAAAAAAATATGAGTTCATTTAGTTCTGACAAAACCTAATCTCAGGTAG CTTGAACATGCAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAA TGTGAGATTGATCTCTATATATATTTCATTCAAATCACTTATTTGGTGCATTCTTTAGGCAGGA AGAAAAATCATTAACCTTGAAAGATAGCCTATCAACCCTGTTTTATGTTGCTCCAGGATTCACA TTCAAAGGAAAATGATGTAAAGGAAGATGGTATGTACTTGAGGACCTATTTATGGTTTTGTGAG ACACCAATAGAGCATATTTCTTTGTGTGAGATTAAGTATGCATTTGATTATGTAGGTAGTTCTC AGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGT AGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCT GGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAAT GGGTACAAGTCCTTTGACAACGAGCGTTTGCATTATTTTTTTGATAAGTTTTGAATTAAAATCC TTGTATATGGTAATAGAATGGTAGTCCACAAGGCAAGAAAAAAATTTGCTCTACTCTAGCCATA ACGACTTCCATAATGAATGTTAAATCCACTTATTTTGGGAATGGGGATTAGCATGTGGCAAGAT GCCATCTTTTAATTTTGAAGGGATGATTTATATATTTATTTTGGAAAGGGTTGTTGTCTTTTGA AGATGCTTATTTTTATTCTTTGCCCTTGTGTATATGTCAATGTAAAGATGTCGCTACTTGTATA ATTTAATTATACCTTGGCCATTTTCAGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGT CTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGTATGATGTTAAATTGTTAACAT GACATTGGACTCGTTATTTTCTTCAGAACATCATGGATAGTCTTATTGAAGCACCAAAATATTT GTTCCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCCTCT CTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCAC TCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.223420791

Conservation Information
Conserved circRNAs	NA
PMCS	0.223420791

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							1458666-1460850(+)
1460841-1459195(+)
1459348-1460847(-)
						
					

						Potential amino acid sequence
						
							MWGAQPMVPPYGTPPPYMMYPPGTVYAHPSTPGVHPFNHYPMLANGNVETAGTAPGASEINGKN
ELGRTSGPSANGITSHSESGSESESEGSDANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSM
APTQTGVVIGGVAPTTNLNIGMDYWGAAGSSPVPAMHGKASSGSVRGEQWDERELKKQKRKQSN
RESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHNASLKEQSPATTSGT
TAPVYPEWPGFQAYSAIPPHGFFPPPVAASPQAHPYMWGAQPMVPPYGTPPPYMMYPPGTVYAH
PSTPGVHPFNHYPMLANGNVETAGTAPGASEINGKNELGRTSGPSANGITSHSESGSESESEGS
DANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPTQTGVVIGGVAPTTNLNIGMDYWGAA
GSSPVPAMHGKASSGSVRGEQWDERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAE
NSSLRAELERIKKEYEALLSHNASLKEQSPATTSGTTAPVYPEWPGFQAYSAIPPHGFFPPPVA
ASPQAHPYMWGAQPMVPPYGTPPPYMMYPPGTVYAHPSTPGVHPFNHYPMLANGNVETAGTAPG
ASEINGKNELGRTSGPSANGITSHSESGSESESEGSDANSQNDSHSKENDVKEDGSSQNGISHT
ALNQNMSMAPTQTGVVIGGVAPTTNLNIGMDYWGAAGSSPVPAMHGKASSGSVRGEQWDERELK
KQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHNASLKEQ
SPATTSGTTAPVYPEWPGFQAYSAIPPHGFFPPPVAASPQAHPYMWGAQPMVPPYGTPPPYMMY
PPGTVYAHPSTPGVHPFNHYPMLANGNVETAGTAPGASEINGKNELGRTSGPSANGITSHSESG
SESESEGSDANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPTQTGVVIGGVAPTTNLNI
GMDYWGAAGSSPVPAMHGKASSGSVRGEQWDERELKKQKRKQSNRESARRSRLRKQAECEELSV
RADNLRAENSSLRAELERIKKEYEALLSHNASLK(+)
MLHSRSSLQPLHLALQLQFTLNGLVFRPTRQFHRMGSFHLLLLQVPRLIPTCGELSPWCHLTGH
HHLI*(+)
MHTRSRGMCIYSSWRIHHIRWWCPVRWHHGLSSPHVGMSLGTCSNRRWKEPMRWNCRVGLKTRP
FRVNWSCSARCSGWRLLLE*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	1458666-1460850(+) 1460841-1459195(+) 1459348-1460847(-)
Potential amino acid sequence	MWGAQPMVPPYGTPPPYMMYPPGTVYAHPSTPGVHPFNHYPMLANGNVETAGTAPGASEINGKN ELGRTSGPSANGITSHSESGSESESEGSDANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSM APTQTGVVIGGVAPTTNLNIGMDYWGAAGSSPVPAMHGKASSGSVRGEQWDERELKKQKRKQSN RESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHNASLKEQSPATTSGT TAPVYPEWPGFQAYSAIPPHGFFPPPVAASPQAHPYMWGAQPMVPPYGTPPPYMMYPPGTVYAH PSTPGVHPFNHYPMLANGNVETAGTAPGASEINGKNELGRTSGPSANGITSHSESGSESESEGS DANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPTQTGVVIGGVAPTTNLNIGMDYWGAA GSSPVPAMHGKASSGSVRGEQWDERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAE NSSLRAELERIKKEYEALLSHNASLKEQSPATTSGTTAPVYPEWPGFQAYSAIPPHGFFPPPVA ASPQAHPYMWGAQPMVPPYGTPPPYMMYPPGTVYAHPSTPGVHPFNHYPMLANGNVETAGTAPG ASEINGKNELGRTSGPSANGITSHSESGSESESEGSDANSQNDSHSKENDVKEDGSSQNGISHT ALNQNMSMAPTQTGVVIGGVAPTTNLNIGMDYWGAAGSSPVPAMHGKASSGSVRGEQWDERELK KQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHNASLKEQ SPATTSGTTAPVYPEWPGFQAYSAIPPHGFFPPPVAASPQAHPYMWGAQPMVPPYGTPPPYMMY PPGTVYAHPSTPGVHPFNHYPMLANGNVETAGTAPGASEINGKNELGRTSGPSANGITSHSESG SESESEGSDANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPTQTGVVIGGVAPTTNLNI GMDYWGAAGSSPVPAMHGKASSGSVRGEQWDERELKKQKRKQSNRESARRSRLRKQAECEELSV RADNLRAENSSLRAELERIKKEYEALLSHNASLK(+) MLHSRSSLQPLHLALQLQFTLNGLVFRPTRQFHRMGSFHLLLLQVPRLIPTCGELSPWCHLTGH HHLI(+) MHTRSRGMCIYSSWRIHHIRWWCPVRWHHGLSSPHVGMSLGTCSNRRWKEPMRWNCRVGLKTRP FRVNWSCSARCSGWRLLLE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0128200_circ_g.2

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